PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR92771.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24299.8 Da    PI: 8.1026
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR92771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvt+skRrng+lKKA+E+ vLCda+v+++ifs tgk+ ey+s
  RWR92771.1  9 KRIENSTNRQVTYSKRRNGLLKKAKEITVLCDADVSLVIFSATGKMSEYCS 59
                79***********************************************96 PP
2K-box81.32.2e-2771163197
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 yqk+sg++l++ak+e+l+ e++++kke++++q e+Rhl+GedL+sL  keL ++e++Le++l+ +R+k++ell      l+k e+ l+een++L+ +
  RWR92771.1  71 YQKASGNRLWDAKHEYLSMEVDRIKKENDSMQIELRHLKGEDLTSLHPKELIHIEEALENGLTGVRDKQEELLS----ILKKNERILEEENMRLTYM 163
                 899*********************************************************************96....5777777777777777644 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRGKIEIKR IENSTNRQVT YSKRRNGLLK KAKEITVLCD ADVSLVIFSA TGKMSEYCSS  60
STTLIKMLDR YQKASGNRLW DAKHEYLSME VDRIKKENDS MQIELRHLKG EDLTSLHPKE  120
LIHIEEALEN GLTGVRDKQE ELLSILKKNE RILEEENMRL TYMLHHHHLA IDGNVRDVEQ  180
GYQQKESECS SQMQFAFRVQ PIQPNLQNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-85MIKC_MADS family protein