PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92836.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

GATA

Protein Properties

Length: 563aa MW: 61035.1 Da PI: 7.4854

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	42.5	8.8e-14	71	105	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg t TplWR+gp g++ LCnaCG ++r kg+ RWR92836.1 71 CCHCGITYTPLWRNGPPGKPVLCNACGSRWRTKGT 105 99******************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MYIMETNKSH DITRLSSDIM AFSILRKGQV CILGCCCLWV VLVLLIGLAT EVSLDLVSEG 60 GSIEMPKQGP CCHCGITYTP LWRNGPPGKP VLCNACGSRW RTKGTLASYA PLHSRGPVLS 120 DSGVKRNSRE HKSSSNKKPQ SLNIRTQNDV EIISGDIVPG NESSAIGCED DTSNGSSSGS 180 RLSFSESTVL LGSVDGIEVS GSLQSDSWDP HIPSKTRTSN GCHSPSPVEK LRRDLYNILQ 240 EQDSTYLSGS SEEVLLFQRE DPMLSVETDL GSVLIKQPAS LTEEKSEADS CLKGTGVNSS 300 NVTTLGSLLS CVPSQSCEVS SSSSGKHRLL LEIEEEGVKE RPMKRRALAD ISSENILPNK 360 VDVLESSRSP QRSMDLISTK GEDFKLEKEI SSCSSQIVSG ATSIPTKKPL SQLPKYPSSR 420 VTKGNMKVQN RCSTNLHPRQ ASSSTNRAFE EMLMSGGSED HKQLMMPHSS ANRSTLSINK 480 SSTILDIMRE DQLSSAVSCP RPPERLIYGL VSSVIQNVQS LKVNCFTPAV NALSSRYSFS 540 KAACTEQVPP VVANCSWQFC KNQ

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MYIMETNKSH DITRLSSDIM AFSILRKGQV CILGCCCLWV VLVLLIGLAT EVSLDLVSEG  60
GSIEMPKQGP CCHCGITYTP LWRNGPPGKP VLCNACGSRW RTKGTLASYA PLHSRGPVLS  120
DSGVKRNSRE HKSSSNKKPQ SLNIRTQNDV EIISGDIVPG NESSAIGCED DTSNGSSSGS  180
RLSFSESTVL LGSVDGIEVS GSLQSDSWDP HIPSKTRTSN GCHSPSPVEK LRRDLYNILQ  240
EQDSTYLSGS SEEVLLFQRE DPMLSVETDL GSVLIKQPAS LTEEKSEADS CLKGTGVNSS  300
NVTTLGSLLS CVPSQSCEVS SSSSGKHRLL LEIEEEGVKE RPMKRRALAD ISSENILPNK  360
VDVLESSRSP QRSMDLISTK GEDFKLEKEI SSCSSQIVSG ATSIPTKKPL SQLPKYPSSR  420
VTKGNMKVQN RCSTNLHPRQ ASSSTNRAFE EMLMSGGSED HKQLMMPHSS ANRSTLSINK  480
SSTILDIMRE DQLSSAVSCP RPPERLIYGL VSSVIQNVQS LKVNCFTPAV NALSSRYSFS  540
KAACTEQVPP VVANCSWQFC KNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-51	GATA family protein