PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93088.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 32005.9 Da PI: 6.0496

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.5e-18	79	131	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ +q+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k RWR93088.1 79 KKRLNMDQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 131 556899**********************************************9 PP
2	HD-ZIP_I/II	128.4	2.9e-41	77	169	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+ +qvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k++ne+L++++++L++e+++ RWR93088.1 77 EKKKRLNMDQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKADNESLQAKNNKLQAEISA 169 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MTCNEMAFFT SNFMLQTHEQ DLPSTSFNQI LPSCTPQDFH GVASLLGKRS MSFSGIEGCE 60 EMNCDDELSD DCSQAGEKKK RLNMDQVKTL EKNFELGNKL EPERKMQLAR ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD VLKRQFEAMK ADNESLQAKN NKLQAEISAL KSRETTEPIN 180 LNKETEGSCS NRSENSSDIN LDLSRTSATD SPLSSNPNRH LFPSMRPTAV AHLLHNTTRS 240 ELQCPKIEHP VQEESFCNMF MGMDDHSGFW PWPEHHNFQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-104	HD-ZIP family protein