PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93096.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HB-other

Protein Properties

Length: 1244aa MW: 140425 Da PI: 8.757

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.5	9.7e-13	17	67	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql+ Le+++ +++yps++++e+ A l+Lt +qV+ WF rR kekk RWR93096.1 17 KTHFQLNSLENFYLEDKYPSQKAMEDYAVALKLTYKQVRGWFIERRRKEKK 67 5889**********************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1244 aa Download sequence
MENEEAAAKQ ETGTKRKTHF QLNSLENFYL EDKYPSQKAM EDYAVALKLT YKQVRGWFIE 60 RRRKEKKEKE AFCSSGKIGP GNVMDSVLDC TLNRSYGNKI YNQRSLGPRV KTQPKHNRTR 120 FPDLDRSKKN CSTVIAKSRH MKNPSVGMKN SNQKKHLFGL QDLLTPEYIL KKVFRKDGPP 180 LGVEFDPLPA GAFRRCSGSV AASRDGQRKP KRRKISESSI LGSRIQTLKG APVKKYGIGK 240 GLMTLWRATN PDAQCLPTGV NFINREAAKM CVNSTFLDLR ESSHQQPKKS QYRRIAARQR 300 LLGSKSQNNR KPSIKRRKVE CNKDENRKKA YTAECKLAIG GLRPQEQSGA IMVSMDDEEL 360 ELRELQAGPN PLTCSHLAIE GRRSCSLCKD LLARFPPQSV KMKQPLCTRP WDSSPEIVRK 420 LFKARFQLKD EGCSIGKAFS LIPHPSSTLK FVSLTVFQFL YTHSVAVDVC PFTLDEFAQA 480 FHDKDSLLLG KIHVVLLNLL LGDVGRELSS GFLPRAAKDC RFLGFLHFIM EQGFDVNFWN 540 RALNPLTWIE ILRLVLVAAG FSAKQSSLRR ETLSKDLLYM FYNQESEPWP GQRGVVWRNM 600 VCVLVLLRVN CLTFWPSKEV MGQKFLIWPS LFRQIVELNL PDTADELEQR ICSTLSSDIT 660 LFEKISPSAY RLRVNTLTSK GTGTYQSDSE DSGSVDDDSE SSCNSDSGDS DHSEPEELDS 720 GDDCRIVKHK GRRKMKNNKL TEYTEIDESQ SGEVWVLGLM EGEYSDLSIE EKLNVLVALV 780 DLTAAGSSIR PENTVRALSE NTVEMQHRGS GAKLKRSSVS QQLWSKPFQG HVGYVHSIDG 840 QSFGKTGGCH RSNSLKSRGA EHIGEPGSDM HPLQSIYLGS DRRYNSYWLF LGPCDGKDPG 900 HRRVYFESSE DGHWEVIDTE QALCALLSVL NGRGARESQL LASLEKREAF LCEAMHNNMA 960 IVSGARQSTR SDQCDMDAVS GDGSSPISDI DNNLTPAGAV NVSMALSGAI VLEHERNGEE 1020 KKKKWDRLQA FDLWIWNSFY SNLNAVKYSR RSYLESLARC ESCHDLYWRD EKHCKTCHTT 1080 FELDFDMEER YTIHIATCKE KEDGNLFVGH KILPSQLQSL KAALHAIEAA MPETALDGAW 1140 RRSAHKLWVK RLRRTSSLAE FLQVLNDFVG AINEDWLCQC NVSLGPNTAL EEIMVFFPTI 1200 PQTTSAVALW LVKLDALLAH PESVQSEKSP ESNPHPRRNN RRKP

Sequence ? help Back to Top

Protein Sequence Length: 1244 aa Download sequence

MENEEAAAKQ ETGTKRKTHF QLNSLENFYL EDKYPSQKAM EDYAVALKLT YKQVRGWFIE  60
RRRKEKKEKE AFCSSGKIGP GNVMDSVLDC TLNRSYGNKI YNQRSLGPRV KTQPKHNRTR  120
FPDLDRSKKN CSTVIAKSRH MKNPSVGMKN SNQKKHLFGL QDLLTPEYIL KKVFRKDGPP  180
LGVEFDPLPA GAFRRCSGSV AASRDGQRKP KRRKISESSI LGSRIQTLKG APVKKYGIGK  240
GLMTLWRATN PDAQCLPTGV NFINREAAKM CVNSTFLDLR ESSHQQPKKS QYRRIAARQR  300
LLGSKSQNNR KPSIKRRKVE CNKDENRKKA YTAECKLAIG GLRPQEQSGA IMVSMDDEEL  360
ELRELQAGPN PLTCSHLAIE GRRSCSLCKD LLARFPPQSV KMKQPLCTRP WDSSPEIVRK  420
LFKARFQLKD EGCSIGKAFS LIPHPSSTLK FVSLTVFQFL YTHSVAVDVC PFTLDEFAQA  480
FHDKDSLLLG KIHVVLLNLL LGDVGRELSS GFLPRAAKDC RFLGFLHFIM EQGFDVNFWN  540
RALNPLTWIE ILRLVLVAAG FSAKQSSLRR ETLSKDLLYM FYNQESEPWP GQRGVVWRNM  600
VCVLVLLRVN CLTFWPSKEV MGQKFLIWPS LFRQIVELNL PDTADELEQR ICSTLSSDIT  660
LFEKISPSAY RLRVNTLTSK GTGTYQSDSE DSGSVDDDSE SSCNSDSGDS DHSEPEELDS  720
GDDCRIVKHK GRRKMKNNKL TEYTEIDESQ SGEVWVLGLM EGEYSDLSIE EKLNVLVALV  780
DLTAAGSSIR PENTVRALSE NTVEMQHRGS GAKLKRSSVS QQLWSKPFQG HVGYVHSIDG  840
QSFGKTGGCH RSNSLKSRGA EHIGEPGSDM HPLQSIYLGS DRRYNSYWLF LGPCDGKDPG  900
HRRVYFESSE DGHWEVIDTE QALCALLSVL NGRGARESQL LASLEKREAF LCEAMHNNMA  960
IVSGARQSTR SDQCDMDAVS GDGSSPISDI DNNLTPAGAV NVSMALSGAI VLEHERNGEE  1020
KKKKWDRLQA FDLWIWNSFY SNLNAVKYSR RSYLESLARC ESCHDLYWRD EKHCKTCHTT  1080
FELDFDMEER YTIHIATCKE KEDGNLFVGH KILPSQLQSL KAALHAIEAA MPETALDGAW  1140
RRSAHKLWVK RLRRTSSLAE FLQVLNDFVG AINEDWLCQC NVSLGPNTAL EEIMVFFPTI  1200
PQTTSAVALW LVKLDALLAH PESVQSEKSP ESNPHPRRNN RRKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	19	KRKTH
2	61	66	RRRKEK
3	61	68	RRRKEKKE
4	207	214	QRKPKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	HB-other family protein