PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93305.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 616aa MW: 68169.9 Da PI: 6.6652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	451	497	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq RWR93305.1 451 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 497 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MRMEMGMGRF WSEEDKAMAV AVMGSDAFNY LWTSHASAES LFAAAGGVDD GNLQNKLSEI 60 VEGSNSFKFG VSQTKSGELV LGWGDGYCRE PEEGEESETR VLSFGEKDCI QQKMRKGVLQ 120 KLHTFFGGSE EESYAFGLDR VSGTEMYYLS SMYFSFPRGV GAPGKSFRSG EPVWLSGMLN 180 SPSDFCIRSF LARLAGIQTA VLVPTETGVI ELGSVRPIPK NVRVLQMIKS MFSISAFPLI 240 KVNGMVPVSV VSENKGGHVP TSSFGFSGEH KEELPKIFGH NLSTGLSQIG EKLVVPKVEE 300 KPWDVHSNGS RMPFMHSSKG LQGLNWNPAR CVKPGVELNT SQSLLHPAQK FNNNIMMVSK 360 GIDSAHQAYL PSNGFKEDTW CSQFQPQQQQ QRQIDFTRTP RGSTITHLST VESEHSDVEA 420 SGKEDQAGQA DEHKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM 480 DKASLLGDAI AYITELQKKL KEMESDRDTF GTTSRDASSE ATSVENQKRS QSPGIDIQAV 540 HDEVIVRVTS PLDTHPVSKI IRTLKEAHVD VIDSKIAAAN DTVFHTFVLK SQGPEELNKE 600 KLIAAVSREF MIVDND

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MRMEMGMGRF WSEEDKAMAV AVMGSDAFNY LWTSHASAES LFAAAGGVDD GNLQNKLSEI  60
VEGSNSFKFG VSQTKSGELV LGWGDGYCRE PEEGEESETR VLSFGEKDCI QQKMRKGVLQ  120
KLHTFFGGSE EESYAFGLDR VSGTEMYYLS SMYFSFPRGV GAPGKSFRSG EPVWLSGMLN  180
SPSDFCIRSF LARLAGIQTA VLVPTETGVI ELGSVRPIPK NVRVLQMIKS MFSISAFPLI  240
KVNGMVPVSV VSENKGGHVP TSSFGFSGEH KEELPKIFGH NLSTGLSQIG EKLVVPKVEE  300
KPWDVHSNGS RMPFMHSSKG LQGLNWNPAR CVKPGVELNT SQSLLHPAQK FNNNIMMVSK  360
GIDSAHQAYL PSNGFKEDTW CSQFQPQQQQ QRQIDFTRTP RGSTITHLST VESEHSDVEA  420
SGKEDQAGQA DEHKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  480
DKASLLGDAI AYITELQKKL KEMESDRDTF GTTSRDASSE ATSVENQKRS QSPGIDIQAV  540
HDEVIVRVTS PLDTHPVSKI IRTLKEAHVD VIDSKIAAAN DTVFHTFVLK SQGPEELNKE  600
KLIAAVSREF MIVDND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-145	bHLH family protein