PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93352.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family RAV
Protein Properties Length: 345aa    MW: 39438.5 Da    PI: 8.9292
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.61.5e-083985254
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                ++kGV     +g W ++I+       + +r++lg+f +++eAa a++ a  kl+
  RWR93352.1 39 RFKGVVLQQ-NGHWGSQIYA------NhQRIWLGTFKSEQEAALAYDSASIKLR 85
                589998777.8******999......44**********99*********99997 PP
2B389.13.6e-28162260183
                 EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                 f+k+ltpsdv+k++rlv+pkk+a+++                 gg+k e+++l + d + rsW+++++y+k+s+++v+t+GW++Fvk+++Lk++D+vvF
  RWR93352.1 162 FQKELTPSDVGKLNRLVIPKKHATKFfpplnegrgigeesssdGGSK-EEVQLEFFDNNMRSWKFRYCYWKSSQSFVFTRGWNRFVKDKQLKAKDVVVF 259
                 99********************************9999999965444.66899999******************************************* PP

                 E CS
          B3  83 k 83 
                 +
  RWR93352.1 260 Y 260
                 9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MSTTSNTVMT REGSASNSIT NPYQPNKRLR HKNPSTPVRF KGVVLQQNGH WGSQIYANHQ  60
RIWLGTFKSE QEAALAYDSA SIKLRSGDSH RNFPWTNLTI QEPSFQELFS IEAVLNMIKD  120
GSYESKFADY LRTRSAKATF DGLLDPNRGF VNQEGVLCQQ IFQKELTPSD VGKLNRLVIP  180
KKHATKFFPP LNEGRGIGEE SSSDGGSKEE VQLEFFDNNM RSWKFRYCYW KSSQSFVFTR  240
GWNRFVKDKQ LKAKDVVVFY ECRYREVSTV KKGFWMIDIA SDGSCENVKN CIDSIGGDVE  300
LQLCLGGLSG HGPDWKDNKV NEEKEEELPD MHKKRVKLFG IDINK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-97RAV family protein