PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93574.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 412aa    MW: 46224.7 Da    PI: 4.6957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.6e-133877241
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                +ie+k +r vt+skR++g++KKA+ L    ++evavi f 
  RWR93574.1 38 KIEDKQRRFVTLSKRKEGLFKKAKKLALDFGVEVAVIGFT 77
                59***********************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MILSSEAALA RKHQLHFHFV RLYFHFNNMG KRKIEMIKIE DKQRRFVTLS KRKEGLFKKA  60
KKLALDFGVE VAVIGFTVGG RPFSFGSSSV DDIIDKYAQN HPLQFTEQEK IHTAIHQEKS  120
NVKLINSEGS IGNELMDYAS ALTMLKDTPV QTMAGISQKY NREDDHSIDK DASFTYLGLG  180
EYSKSYCCNN APPLAEVQLK NENDINSLIT SSTGDKILAD SSYHVSPDCG TDLFSTDDLI  240
CSHSINDPTF LPVLRDDELD DDCWNEIAST SISHHYTTAL QGDFIGETIQ GGGFPFINAD  300
HMADLWPEKY VTDSYLEETV ADYETELGPM ENVTNLHLEK SKRFPTNLVT KGLPQMEASF  360
CYFSSLNNQQ AYGEMTSIPS SSSLCAGNFE YSDWLLDGLE AELAPLTQRT PY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-14M-type_MADS family protein