PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93778.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HSF
Protein Properties Length: 233aa    MW: 26664.2 Da    PI: 8.4888
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.49.5e-33281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++ ++ed+ ++++isw+++g++fvv+ + efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k  + +         weF+++ F++g++ ll++i+
    RWR93778.1  28 FLLKTHMLVEDPGTDNIISWNDQGTAFVVWRPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKAASGR---------WEFHNDMFRRGETGLLCEIH 115
                   99*************************************************************99877.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    RWR93778.1 116 RRKA 119
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MSQETSCMEH ECLKGPKDLF KRASPPPFLL KTHMLVEDPG TDNIISWNDQ GTAFVVWRPA  60
EFARDLLPTL FKHSNFSSFV RQLNTYGFRK AASGRWEFHN DMFRRGETGL LCEIHRRKAW  120
SSKLSTAPSK TQSPESDEDH GSSSTSSSSS YSILCDENKK LKRENGVLCM ELASTKKRCK  180
ELFDLVALYS NSESVVEDQR PKLFGVRLEL PQEKKRKDEF SDNIRNLLSQ SCK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.18e-61HSF family protein