PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR94014.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 346aa    MW: 38299.9 Da    PI: 7.7037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR94014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.62.8e-15271296126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tGtC+yGd C+FaHg
  RWR94014.1 271 FKTELCNKWQETGTCPYGDHCQFAHG 296
                 79***********************8 PP
2zf-CCCH20.21.1e-06309333125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 ykte Cr  +++ tC+yG rC+F H
  RWR94014.1 309 YKTEVCRMVLAGDTCPYGHRCHFRH 333
                 9**********55**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MQMEKGSCNG GIRAAISQTH QLLPTSPRSQ LNGYDLSGLY ASIFPITDSH PNSNSISLTP  60
SPSSCDEENP NSTENRLYLA RVMLQYQQLA EKYGLCLTHL RQTIQESEVL RQENAELRIA  120
NDDLTRRLSL LSLPGKQNPL QSRVGSSSGF PLQSVMDSFQ RLCVGETGQS GRVSVETPEA  180
SPTSVLGFEE NRFQRVAPDR VSLPKSISVR SSGFLKVNQP AGENGASSSR TSRARERSPV  240
AISSQQQRVY VPGGRQGEGS LELEVYNQGM FKTELCNKWQ ETGTCPYGDH CQFAHGIGEL  300
RPVIRHPRYK TEVCRMVLAG DTCPYGHRCH FRHALTEEER TVVDPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-65C3H family protein