PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94024.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

YABBY

Protein Properties

Length: 181aa MW: 20548.4 Da PI: 6.8692

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	39.8	1.7e-12	13	55	23	61
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaes 61 vsvP ++l+k+vtvrCGhC+ llsvn++kas +ll++ + RWR94024.1 13 KVSVPCSCLLKTVTVRCGHCSGLLSVNMTKASfvplHLLTSFE 55 59**************************999866655555554 PP
2	YABBY	105	1.5e-32	76	144	103	169
YABBY 103 enedeevprvpp.virPPekrqrvPsaynrfik.eeiqrikasnPdishreafsaaaknWahfPkihfg 169 e++ ++ vp v++PPekrqr+Psayn fik eei+r+ka P+++h+eafs+aaknWahfP++ ++ RWR94024.1 76 EDDVDDKDPVPTvVNKPPEKRQRAPSAYNHFIKlEEIRRLKAREPNMTHKEAFSTAAKNWAHFPRVQYK 144 33333333344449*****************99****************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MSIMNHFLDL SEKVSVPCSC LLKTVTVRCG HCSGLLSVNM TKASFVPLHL LTSFEVDKQI 60 QELPVDTPPL MHPIEEDDVD DKDPVPTVVN KPPEKRQRAP SAYNHFIKLE EIRRLKAREP 120 NMTHKEAFST AAKNWAHFPR VQYKVDGEGC SQGERKENKD GDIDEVDIQT NGLRERKASR 180 Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	8e-33	YABBY family protein