PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94134.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 459aa MW: 49080 Da PI: 8.541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	3.9e-10	41	65	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C ++++tG C yG+ C+F+H+ RWR94134.1 41 DVVDCAYYMQTGSCGYGAWCRFNHP 65 5789********************8 PP
2	zf-CCCH	38.6	1.8e-12	87	111	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtC+yG+rCk+ H++ RWR94134.1 87 QPVCQYFLRTGTCNYGARCKYDHPR 111 689********************96 PP
3	zf-CCCH	30.9	4.5e-10	132	157	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+C++G++Ck++H++ RWR94134.1 132 GEKECSYYVKTGQCRFGGTCKYHHPE 157 7899********************96 PP
4	zf-CCCH	39	1.4e-12	284	310	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++C+++H+p RWR94134.1 284 PGQPECQFYMRTGDCKFGSSCRYHHPP 310 5789*********************97 PP
5	zf-CCCH	33.3	8e-11	333	356	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f+++ G+Ck+G++CkF H++ RWR94134.1 333 PACTFYSQHGYCKFGPTCKFDHPM 356 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MDIYGRTLPS ASASPSAETG LEESMWELRL AGVAMYPVRP DVVDCAYYMQ TGSCGYGAWC 60 RFNHPCDRSV IAGAVGSREA YPERVGQPVC QYFLRTGTCN YGARCKYDHP RYGHLSASTV 120 SLNNHGFPLR PGEKECSYYV KTGQCRFGGT CKYHHPEPVS TSMSPTAPAF YPTVQSPSVP 180 SPSQAGVTSW QVARPPSVPA SYVPGPYNSL LLSPAVFPYP GWGPYSQPPV SPMVNIGTQQ 240 TVGTGWSSGL TQHLPSYTGP YSSVSSSAGP SSSRSKEHIF PERPGQPECQ FYMRTGDCKF 300 GSSCRYHHPP QWNRPNSNCA LNPMGLPLRP GAPACTFYSQ HGYCKFGPTC KFDHPMGTLS 360 YSPSASSLTD MPVAPYPVGL SLGVLAPSSG LELRREFVAG STRDSSSTRM PPSENTSRAL 420 VGSISSKSGV PGPQSHIQVT GQSSVPPSGS SGMGRGSQS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MDIYGRTLPS ASASPSAETG LEESMWELRL AGVAMYPVRP DVVDCAYYMQ TGSCGYGAWC  60
RFNHPCDRSV IAGAVGSREA YPERVGQPVC QYFLRTGTCN YGARCKYDHP RYGHLSASTV  120
SLNNHGFPLR PGEKECSYYV KTGQCRFGGT CKYHHPEPVS TSMSPTAPAF YPTVQSPSVP  180
SPSQAGVTSW QVARPPSVPA SYVPGPYNSL LLSPAVFPYP GWGPYSQPPV SPMVNIGTQQ  240
TVGTGWSSGL TQHLPSYTGP YSSVSSSAGP SSSRSKEHIF PERPGQPECQ FYMRTGDCKF  300
GSSCRYHHPP QWNRPNSNCA LNPMGLPLRP GAPACTFYSQ HGYCKFGPTC KFDHPMGTLS  360
YSPSASSLTD MPVAPYPVGL SLGVLAPSSG LELRREFVAG STRDSSSTRM PPSENTSRAL  420
VGSISSKSGV PGPQSHIQVT GQSSVPPSGS SGMGRGSQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-134	C3H family protein