PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94140.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 489aa MW: 53366.9 Da PI: 8.064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWR94140.1 30 FVCEICNKGFQRDQNLQLHRRGH 52 89*******************88 PP
2	zf-C2H2	12.2	0.00057	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ RWR94140.1 106 WKCDKCSKKYAVQSDWKAHSKTC 128 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MFTSEVMVYA DPTAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ 60 RTSNEIRKRV YICPETTCVH HNPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD 120 WKAHSKTCGT REYKCDCGTI FSRRDSFITH RAFCDALAEE NSKVNQGVMA NLQGQVSDFI 180 SSMPINNDTN TNTNTSISMS DFDHDIKHPL KSLSHDLMPK SLNMAGGMFS SSSGALFGPR 240 SSISSPSSCL QLSGTATTFD GFQDGKIGRP VSGSAHMSAT ALLQKAAQMG ATVSTNINPP 300 MLQRSFAGMA GSDQLSGMRS FGGVHQNISY DHLQPHTDQT QLVGIDGGSF TNQFLQKTPQ 360 EIQSQFFDGS GTDPTPINDM SVFTSANGMF MGSDQQQQHH MFLKNMGNSG VAIPTGGRNL 420 GASRFGGSGG GDVMTVDFLG VGGASSVSLH EQQQQQQGLE FEGVGEQRMQ GMHQFHGQGG 480 AMEKSMWDV

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MFTSEVMVYA DPTAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  60
RTSNEIRKRV YICPETTCVH HNPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD  120
WKAHSKTCGT REYKCDCGTI FSRRDSFITH RAFCDALAEE NSKVNQGVMA NLQGQVSDFI  180
SSMPINNDTN TNTNTSISMS DFDHDIKHPL KSLSHDLMPK SLNMAGGMFS SSSGALFGPR  240
SSISSPSSCL QLSGTATTFD GFQDGKIGRP VSGSAHMSAT ALLQKAAQMG ATVSTNINPP  300
MLQRSFAGMA GSDQLSGMRS FGGVHQNISY DHLQPHTDQT QLVGIDGGSF TNQFLQKTPQ  360
EIQSQFFDGS GTDPTPINDM SVFTSANGMF MGSDQQQQHH MFLKNMGNSG VAIPTGGRNL  420
GASRFGGSGG GDVMTVDFLG VGGASSVSLH EQQQQQQGLE FEGVGEQRMQ GMHQFHGQGG  480
AMEKSMWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	7e-95	C2H2 family protein