PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94447.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 455aa MW: 50746.6 Da PI: 6.8837

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94447.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl RWR94447.1 14 KGLWSPEEDEKLMRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.1	4.7e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia ++ gRt++++k+ w++ RWR94447.1 67 RGTFSPQEENLIIELHAVLGNR-WSQIATQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLMRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SPQEENLIIE LHAVLGNRWS QIATQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPLS EVENGEDKPP IKTEKASGSK ELKLLTSTST TEDSKLGVPE QKPSLMAVDP 180 YPFDCFTSKI NTSAGNSTTP TKEFLLERFL TSHESSTSNR PSDSMGYFPL QQLSHNSNCS 240 NEMSSVGLSA NTNSVLWFNQ NCRPFEINSE FNSNTIPSAI PSLPSSVLRT SMAFKPIVSL 300 PPPENSSIVC VSDMNGVQYW EAGTSSNSSS SSSANSSSIE LQGNSSIFEN SIFSWGLTDC 360 RVESSDLTSD KEAPINLEGE PEDIKWSEFL PHPFSMTSGI QNQSQNQYGE IKSESQFATI 420 HSTLSTWNPA QQQQLQASHI YGKDFPRTAT AFEHI

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLMRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SPQEENLIIE LHAVLGNRWS QIATQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS EVENGEDKPP IKTEKASGSK ELKLLTSTST TEDSKLGVPE QKPSLMAVDP  180
YPFDCFTSKI NTSAGNSTTP TKEFLLERFL TSHESSTSNR PSDSMGYFPL QQLSHNSNCS  240
NEMSSVGLSA NTNSVLWFNQ NCRPFEINSE FNSNTIPSAI PSLPSSVLRT SMAFKPIVSL  300
PPPENSSIVC VSDMNGVQYW EAGTSSNSSS SSSANSSSIE LQGNSSIFEN SIFSWGLTDC  360
RVESSDLTSD KEAPINLEGE PEDIKWSEFL PHPFSMTSGI QNQSQNQYGE IKSESQFATI  420
HSTLSTWNPA QQQQLQASHI YGKDFPRTAT AFEHI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-101	MYB family protein