PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94482.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 454aa MW: 50851.6 Da PI: 7.786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl RWR94482.1 14 KGLWSPEEDEKLRRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.9	6.4e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ RWR94482.1 67 RGTFSQEEENLIIELHTVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLRRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHTVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQSG 120 IDPNTHKLLS EVEDGEDNPH SNTDRESKSS ELKLLTATTM TEDSKPGLSE QKPQLITAKP 180 YTIDGLNSNI NTTSRNPITP TKEFFIERFA TSHESSTRNR PSDSMGYFPL QHLNSSPNCS 240 NQIATAVASV NANPVLSFNQ NCEPFGMNSQ FNSSSISSVL PSLPSLVLAN SMDFKPVISL 300 APDNNSIGGT NIMRGVQSWG AGTTSNSSNS RSSSSIELQG NSSFFDNHLF SWGLADCRVE 360 SQDLSSEKAA QIHLEGEPED VKWSQLLHHP FSMTSRIPNQ NQNQNLFSEI KSDSQFATIS 420 NSLTTWHQAQ QQQLQASDVY RKEYPRIAAA FEQI

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLRRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHTVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQSG  120
IDPNTHKLLS EVEDGEDNPH SNTDRESKSS ELKLLTATTM TEDSKPGLSE QKPQLITAKP  180
YTIDGLNSNI NTTSRNPITP TKEFFIERFA TSHESSTRNR PSDSMGYFPL QHLNSSPNCS  240
NQIATAVASV NANPVLSFNQ NCEPFGMNSQ FNSSSISSVL PSLPSLVLAN SMDFKPVISL  300
APDNNSIGGT NIMRGVQSWG AGTTSNSSNS RSSSSIELQG NSSFFDNHLF SWGLADCRVE  360
SQDLSSEKAA QIHLEGEPED VKWSQLLHHP FSMTSRIPNQ NQNQNLFSEI KSDSQFATIS  420
NSLTTWHQAQ QQQLQASDVY RKEYPRIAAA FEQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	7e-91	MYB family protein