PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94928.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

RAV

Protein Properties

Length: 348aa MW: 39520.4 Da PI: 7.8611

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.4	1.2e-10	39	85	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV + +g W A+I+ + +r++lg+f +++eAa a++ a+ kl+ RWR94928.1 39 RFKGVVLQP-NGHWGAQIYA------NqQRVWLGTFKSEQEAAMAYDSAAIKLR 85 68**999.8**999......44******99**********98 PP
2	B3	86.4	2.4e-27	162	260	1	83
EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+p+k+a ++ +g ++e+++l + d s rsW+++++y+k+s+++v+t+GW++Fvk+++L ++D++vF+ RWR94928.1 162 FQKELTPSDVGKLNRLVIPRKYAIKFfpplnegsgireesssNGGSAEDVELEFFDNSMRSWKFRYCYWKSSQSFVFTRGWSRFVKDKQLMAKDVIVFY 260 99*****************************99988888844456999**********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MSTTSNTVMT REGSDSNSIT NLYRPNKSLR HQNPSSPARF KGVVLQPNGH WGAQIYANQQ 60 RVWLGTFKSE QEAAMAYDSA AIKLRSIESP RNFPWTSLTI QEPSFQDLFS AEAVLNMIKD 120 GSYESRFAEY LRTRSAKAAF DGLLDPKRGF FNREGILCQQ LFQKELTPSD VGKLNRLVIP 180 RKYAIKFFPP LNEGSGIREE SSSNGGSAED VELEFFDNSM RSWKFRYCYW KSSQSFVFTR 240 GWSRFVKDKQ LMAKDVIVFY ECRYREVCTV KKAFWMVDVA SKGGDENVGN GNDREVGIVG 300 GEVELQLGFG GWSGHGADCK DNEISEEKEE ESADMHKKRV KLFGIEIN

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MSTTSNTVMT REGSDSNSIT NLYRPNKSLR HQNPSSPARF KGVVLQPNGH WGAQIYANQQ  60
RVWLGTFKSE QEAAMAYDSA AIKLRSIESP RNFPWTSLTI QEPSFQDLFS AEAVLNMIKD  120
GSYESRFAEY LRTRSAKAAF DGLLDPKRGF FNREGILCQQ LFQKELTPSD VGKLNRLVIP  180
RKYAIKFFPP LNEGSGIREE SSSNGGSAED VELEFFDNSM RSWKFRYCYW KSSQSFVFTR  240
GWSRFVKDKQ LMAKDVIVFY ECRYREVCTV KKAFWMVDVA SKGGDENVGN GNDREVGIVG  300
GEVELQLGFG GWSGHGADCK DNEISEEKEE ESADMHKKRV KLFGIEIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	5e-98	RAV family protein