PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94981.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 552aa MW: 59987.1 Da PI: 5.652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94981.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.6e-09	368	416	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq RWR94981.1 368 NSHSLAERVRREKISKRMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 416 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MEKSGDYLNY PSSNISLDWR FGSGNLIAPP TCLVPTQNAV AVSEVDPIST SPSSSISMVD 60 SFCSTVWDHP STKNLEFCTS SNIQTSASTT NVVSSRNMGS GSLSSVAMEK VLNFGWNPPN 120 SVPNADVFLQ TGTAVLSQNS TQFPTDYPFI EWAARFSCFN SGDFTNVVNP IRILEHLNPY 180 SKGVGIQMLE VPLNIGLDAG FGAQSQKNES QMTDVVRDYM PVDNGMLESC LTKNGGESGG 240 LLVSSDEEKD GTGASNNEAD EPEFGSSVQE GQFVSENAGG EPSAKALGAK KRKTSSQMDI 300 ELDQSKGSPH LSVETLKENG EPKQNGEKKA ATIAAKTIGK HSKGGCQKSD ASKEDYIHVR 360 ARRGQATNSH SLAERVRREK ISKRMKYLQD LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE 420 VMSMKLAVVN PWLDFNIEAL LSKDTFQSQG STPPTLGFLP DLGMARPQLH PLQHGFIQVA 480 SPSIGNHSDF LRRTISSQLT PMNRYREPAP QIKNAWNDEL HNVVQMSYSD NGPINTQELN 540 GSLLPGHMKV EL

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MEKSGDYLNY PSSNISLDWR FGSGNLIAPP TCLVPTQNAV AVSEVDPIST SPSSSISMVD  60
SFCSTVWDHP STKNLEFCTS SNIQTSASTT NVVSSRNMGS GSLSSVAMEK VLNFGWNPPN  120
SVPNADVFLQ TGTAVLSQNS TQFPTDYPFI EWAARFSCFN SGDFTNVVNP IRILEHLNPY  180
SKGVGIQMLE VPLNIGLDAG FGAQSQKNES QMTDVVRDYM PVDNGMLESC LTKNGGESGG  240
LLVSSDEEKD GTGASNNEAD EPEFGSSVQE GQFVSENAGG EPSAKALGAK KRKTSSQMDI  300
ELDQSKGSPH LSVETLKENG EPKQNGEKKA ATIAAKTIGK HSKGGCQKSD ASKEDYIHVR  360
ARRGQATNSH SLAERVRREK ISKRMKYLQD LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE  420
VMSMKLAVVN PWLDFNIEAL LSKDTFQSQG STPPTLGFLP DLGMARPQLH PLQHGFIQVA  480
SPSIGNHSDF LRRTISSQLT PMNRYREPAP QIKNAWNDEL HNVVQMSYSD NGPINTQELN  540
GSLLPGHMKV EL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	1e-83	bHLH family protein