PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR95145.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27371.8 Da    PI: 8.6346
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR95145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.1e-171152344
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                i n+s r  t+ kR++g++KK +ELS+LC+++++ +i++++ 
  RWR95145.1 11 ITNDSSRRATYKKRKKGLMKKVSELSTLCGVNACAVIYGHNE 52
                89*************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MARKKVKLAW ITNDSSRRAT YKKRKKGLMK KVSELSTLCG VNACAVIYGH NERQPEVWPS  60
FHDAQHILMQ FKTLPEMEQS KKMMNQEAFL RQRMQKLKDQ LSKHQKENRH LEVTMLMNQC  120
LLGKGLEEVS INDLSDLVWL IDSNMKMIHE RTETIKAEAL AASKQQAKEG SMMKMKVGEE  180
ERRATTALEE VVAMEMESLQ RQQWFMDVMS PNDHILSTGG EMTLPFVDGS PWLDGGCP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAWITNDSSRRATYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-47M-type_MADS family protein