PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95307.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HB-other

Protein Properties

Length: 964aa MW: 105629 Da PI: 9.793

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.4	1.8e-06	73	129	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++ ++e +e+++ +g+t +qV+ +F +R + ++ RWR95307.1 73 KRPRDLLNPKAVKYMQSVFSIKDTIGKKETREISALCGVTVTQVREFFAGQRSRVRR 129 799**************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence
MEKRKENLAN GFGEIDIGSS ADSFYRFLDS QKELFHSQVD QLQQIVVTQC RLTGVNPLAQ 60 EMAAGALSIK IGKRPRDLLN PKAVKYMQSV FSIKDTIGKK ETREISALCG VTVTQVREFF 120 AGQRSRVRRL VRLSREKAIR FNSCKESPGG CPTNSDDAML LSNPVPLNSL DPKDVEGPSC 180 SSQEESIPGF DSSDKNFLEN IFNLMRKEET FSGQEKLMEW VLQIHNSAVL QSFIIKGGIM 240 ILATWLSQAA VEEQTTVLLV ILKVLCHLPL HKALPVQMSA ILQSVNRLRF YRTSDISNRA 300 RVLLSRWSKL FVRSQTLKKQ SSKNSPSDLQ KERIRKQRIS EILSDESWQS KIDIPEEILA 360 LAHESPESSR KSEPTKALKL LTASSDDSSK KHVRGTAASQ TRERRKVLLV EQPGSRTSGR 420 SVQVARVSPL NQGRPMSADD IQKAKMRAIF MQSKYGKIDT SSNDNSQQKS EGQKTSGASL 480 TRNTLPPSDG SHLKKEDVTK PAALPSKTSQ TMPENSMDSK PRMAAQEPLW QKLKIDQIQW 540 QAPPEIRINC LWRVGAGERS KEVEVQTGRI RREKEIIYRN LLDIPSNPKD PWDVEMGFDD 600 TLTPEIPTEQ PPEADGAEVS TPRNCEKQIE VSSSRNSDSP AEVGKPAPSA VGGGSAEPDL 660 ELLAVLLKNP ELVFALTSGQ GNSIPSAETV ALLDTLKASG IGLPGILGGL GGNAVKVVEK 720 QDVTSLPSPT PPNERGMNWR SEPAPMYGAP EMLSFPQPVT QTGNRGGSGL STPSATAIPS 780 PEKVPSNGLI PHQIPTTKSS VLHPQVAITS SQQQQRPLIS PQSIKPLPVS VAVSHPHPTP 840 SSMPISQTRV APSMQKPPSN IIPPLQVPVT ASSLRQNPLP EAVLRTNHFQ GTSSVNQNNL 900 PSGSQSQSQQ IPRIRVEISN SGQLSIQKLP PHYSSKSDSQ YFHNHAFWAA YVTDPNEVTA 960 TSTA

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence

MEKRKENLAN GFGEIDIGSS ADSFYRFLDS QKELFHSQVD QLQQIVVTQC RLTGVNPLAQ  60
EMAAGALSIK IGKRPRDLLN PKAVKYMQSV FSIKDTIGKK ETREISALCG VTVTQVREFF  120
AGQRSRVRRL VRLSREKAIR FNSCKESPGG CPTNSDDAML LSNPVPLNSL DPKDVEGPSC  180
SSQEESIPGF DSSDKNFLEN IFNLMRKEET FSGQEKLMEW VLQIHNSAVL QSFIIKGGIM  240
ILATWLSQAA VEEQTTVLLV ILKVLCHLPL HKALPVQMSA ILQSVNRLRF YRTSDISNRA  300
RVLLSRWSKL FVRSQTLKKQ SSKNSPSDLQ KERIRKQRIS EILSDESWQS KIDIPEEILA  360
LAHESPESSR KSEPTKALKL LTASSDDSSK KHVRGTAASQ TRERRKVLLV EQPGSRTSGR  420
SVQVARVSPL NQGRPMSADD IQKAKMRAIF MQSKYGKIDT SSNDNSQQKS EGQKTSGASL  480
TRNTLPPSDG SHLKKEDVTK PAALPSKTSQ TMPENSMDSK PRMAAQEPLW QKLKIDQIQW  540
QAPPEIRINC LWRVGAGERS KEVEVQTGRI RREKEIIYRN LLDIPSNPKD PWDVEMGFDD  600
TLTPEIPTEQ PPEADGAEVS TPRNCEKQIE VSSSRNSDSP AEVGKPAPSA VGGGSAEPDL  660
ELLAVLLKNP ELVFALTSGQ GNSIPSAETV ALLDTLKASG IGLPGILGGL GGNAVKVVEK  720
QDVTSLPSPT PPNERGMNWR SEPAPMYGAP EMLSFPQPVT QTGNRGGSGL STPSATAIPS  780
PEKVPSNGLI PHQIPTTKSS VLHPQVAITS SQQQQRPLIS PQSIKPLPVS VAVSHPHPTP  840
SSMPISQTRV APSMQKPPSN IIPPLQVPVT ASSLRQNPLP EAVLRTNHFQ GTSSVNQNNL  900
PSGSQSQSQQ IPRIRVEISN SGQLSIQKLP PHYSSKSDSQ YFHNHAFWAA YVTDPNEVTA  960
TSTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein