PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95314.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 479aa MW: 50676.9 Da PI: 8.1324

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.3e-11	55	81	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+C yG+rC+++H++ RWR95314.1 55 PGEPDCGFYMRNGFCGYGARCRYNHPR 81 5789*********************96 PP
2	zf-CCCH	38.8	1.6e-12	103	127	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ RWR95314.1 103 QPVCQYFMKTGTCKFGSSCKYHHPR 127 689********************96 PP
3	zf-CCCH	35	2.4e-11	148	173	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G CkF+H++ RWR95314.1 148 DEKECSYYVKTGHCKFGVACKFHHPQ 173 6789********************97 PP
4	zf-CCCH	36.6	7.6e-12	302	325	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f++rtG Ck+G+ C+++H+p RWR95314.1 302 LECQFYMRTGDCKFGSACRYHHPP 325 58********************97 PP
5	zf-CCCH	34.3	4.1e-11	348	371	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C f+a+ G+Ck+G++CkF H++ RWR95314.1 348 QPCTFYAQHGICKFGSTCKFDHPM 371 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MYGRIRPSME GSASDPPGEW NAPAAPETAL QESMLQLELG GGGAGDPSLL YPVRPGEPDC 60 GFYMRNGFCG YGARCRYNHP RDRGTVTGAV RSGGGEYPER VGQPVCQYFM KTGTCKFGSS 120 CKYHHPRHGG LSSSMVSLNY YGYPLRPDEK ECSYYVKTGH CKFGVACKFH HPQPLGIEMP 180 SSAPTFYPTV QPPPVPSPSV AGWQVVRPPL MPTSYVQGPY PVLLSPGVVQ IPGWSHYPPP 240 ASPAASPGTQ HAVGTGLLYG LTQQLSPSAP AYPGPFSSVS SSAGPSTSSQ KEHMFPERPG 300 QLECQFYMRT GDCKFGSACR YHHPPEWSMP KTTCALNSEG LPLRPGAQPC TFYAQHGICK 360 FGSTCKFDHP MGMLSYSSSA SSLADMAVAP YPIGSSMGTL APSSSSSELR PEFVAGSNRE 420 SFSSRIQSSE TMSSGSVGSI FSKGGASVPQ THAQISGQSS VPSSGGTSTG PASEKPSST

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MYGRIRPSME GSASDPPGEW NAPAAPETAL QESMLQLELG GGGAGDPSLL YPVRPGEPDC  60
GFYMRNGFCG YGARCRYNHP RDRGTVTGAV RSGGGEYPER VGQPVCQYFM KTGTCKFGSS  120
CKYHHPRHGG LSSSMVSLNY YGYPLRPDEK ECSYYVKTGH CKFGVACKFH HPQPLGIEMP  180
SSAPTFYPTV QPPPVPSPSV AGWQVVRPPL MPTSYVQGPY PVLLSPGVVQ IPGWSHYPPP  240
ASPAASPGTQ HAVGTGLLYG LTQQLSPSAP AYPGPFSSVS SSAGPSTSSQ KEHMFPERPG  300
QLECQFYMRT GDCKFGSACR YHHPPEWSMP KTTCALNSEG LPLRPGAQPC TFYAQHGICK  360
FGSTCKFDHP MGMLSYSSSA SSLADMAVAP YPIGSSMGTL APSSSSSELR PEFVAGSNRE  420
SFSSRIQSSE TMSSGSVGSI FSKGGASVPQ THAQISGQSS VPSSGGTSTG PASEKPSST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-136	C3H family protein