PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95376.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 702aa MW: 78402.8 Da PI: 5.0643

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	490	536	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ RWR95376.1 490 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 536 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MACPGSSRLQ QMLQAAVQGV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS 60 AEEASLQRSQ QLRELYESLS AGETGQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAYAKRQ HVWLTGANEA DSKVFSRAIL AKSARIQTVL CIPLMDGVLE LGTTDRVQED 180 SGLIQHAKNY FMDHYNQHHF PKPALSEHST SNPMSSSERP HYHSPPVPAM FAPIAPRIKE 240 AEANQEVDDD DDDDEEEDEE EEEPELDSEA ETGRESPVNV AQNPLQLHGQ VTDGTVMGQA 300 AAEPSELMQL EMSEDIRFGS PDDGSNNLDS ELQVLAGVGP VDHYQHAESY RAESARPWPM 360 LQYELSSDLP HSGGPQIPEL TQEDAHYSHT VSVILQLNAS RWTVSSSASS YLRYSQQSAF 420 SNWNCRSDYD PLLRPPALDG TSQWMIKYIL FTLPSLHTKY KDEDSPKSRE GGDAGTRFRK 480 GTPQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRRKIQ 540 DLESRNREFE IDQRAKGTEL HKSSNSKEVV QQSSGSAKAN ASQSLSTDRS RLPVMEKRKM 600 RIIEGTGSVK TKGVEATFSN TVEVSIIESD ALLELKCPYR DGLLLEIMQI LCELRLEITA 660 VQSSSTNGAL DAEIRAKVKV RINGKKASIV EVKKAINQII SQ

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MACPGSSRLQ QMLQAAVQGV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETGQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYAKRQ HVWLTGANEA DSKVFSRAIL AKSARIQTVL CIPLMDGVLE LGTTDRVQED  180
SGLIQHAKNY FMDHYNQHHF PKPALSEHST SNPMSSSERP HYHSPPVPAM FAPIAPRIKE  240
AEANQEVDDD DDDDEEEDEE EEEPELDSEA ETGRESPVNV AQNPLQLHGQ VTDGTVMGQA  300
AAEPSELMQL EMSEDIRFGS PDDGSNNLDS ELQVLAGVGP VDHYQHAESY RAESARPWPM  360
LQYELSSDLP HSGGPQIPEL TQEDAHYSHT VSVILQLNAS RWTVSSSASS YLRYSQQSAF  420
SNWNCRSDYD PLLRPPALDG TSQWMIKYIL FTLPSLHTKY KDEDSPKSRE GGDAGTRFRK  480
GTPQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRRKIQ  540
DLESRNREFE IDQRAKGTEL HKSSNSKEVV QQSSGSAKAN ASQSLSTDRS RLPVMEKRKM  600
RIIEGTGSVK TKGVEATFSN TVEVSIIESD ALLELKCPYR DGLLLEIMQI LCELRLEITA  660
VQSSSTNGAL DAEIRAKVKV RINGKKASIV EVKKAINQII SQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	495	500	ERRRRE
2	496	501	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-101	bHLH family protein