PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR95559.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 212aa    MW: 23190.1 Da    PI: 5.2217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR95559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.5e-42361351100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+C+++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++
  RWR95559.1  36 PCAACKILRRRCVDKCVLAPYFPPSEPLKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVSELQTQLAKARA 134
                 7**********************************************************************************************9987 PP

      DUF260 100 e 100
                 e
  RWR95559.1 135 E 135
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MEGSDIVMTP TNVSVSSSPS HSSSPPPPTN PVVVSPCAAC KILRRRCVDK CVLAPYFPPS  60
EPLKFTTAHR VFGASNIIKF LQELPESQRA DAVSSMVYEA NARIRDPVYG CAGAICHLQK  120
QVSELQTQLA KARAEVVNMQ TQQANLLALV CMEMAHSEES QELTPQPFED NYFPTNQYNS  180
FSSSSSHSNF NGSLLDDNCY GLGASWEPAL WT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-67LBD family protein