PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR95560.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 343aa    MW: 39706.5 Da    PI: 5.6551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR95560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF498e-16952144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                k+ie +  r+ tf kRr+g+ KKA+E  +LC+++v++i f+++g
  RWR95560.1  9 KFIECQKSRYNTFLKRRKGLNKKAFEFATLCGVDVCMICFGPQG 52
                78999*************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MGRSKVTIKF IECQKSRYNT FLKRRKGLNK KAFEFATLCG VDVCMICFGP QGDQQHEPLI  60
WPNDPKEIRR IIKRYEGLNK EEQDRRKLDL MGFLEERIKK LGEELDRKGE ERANMLYPSW  120
DDRLNDLPEE VLRDLLAELD SKLVMVNEKI ELLKENLPGK EVSLDFAPQT YINHMQELTY  180
PNHMQELSMY EKNAMMDVNL MAIQPIQPLQ PVPISCVRPL DQIHMPMQLP YNPNVSTFPN  240
LNTSNDNHLL PPVYGCYGDS GIEILDNDFM LHSQRESCGD GCSCSFLQFQ SSAMEPPPSL  300
SSLNSNLQPL QAEEAVFLHQ TYHSHQGSSD IKELLIKMNR RRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-21M-type_MADS family protein