PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR95739.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 396aa    MW: 44772 Da    PI: 6.7127
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR95739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.21.5e-124303951373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 +++lL++cAe +s++dl+ a+++++ l +++spdgd+++Rl++ ft AL+ rl+       + +   +t+   s  + +++  +++++P+++fshltaN
  RWR95739.1  30 MRQLLISCAELISQSDLASARRMVSLLFTRSSPDGDSTERLVQQFTIALSMRLNA------HNFI--PTD---SGAVQSSYLSLNQITPFIRFSHLTAN 117
                 589***************************************************9......3333..333...4456678889**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl........vakrled 188
                 qaIleaveg++ +HiiDfd +qG+QWp+L+qa+a+R+  ++pps+RiTg g+    + e+l++tg+rL+kfA +lg++f+f++l         a ++  
  RWR95739.1 118 QAILEAVEGHSSIHIIDFDTMQGVQWPPLMQAIAERSdpSNPPSIRITGTGH----DMETLRRTGDRLQKFACSLGINFHFHPLqiphdtspSAAAVLR 212
                 ************************************98888***********....****************************999888775666777 PP

        GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                 l ++++++ p+E+laVn+vl lh+ll+++         +L+++k ++Pkvv+v+e+e +hn++ Fl+rf+eal+yy+a+f+sl+a+lp++s+er+ vE+
  RWR95739.1 213 LLPSSIAILPDEVLAVNCVLYLHKLLSDDSRNVR---LFLRTIKAMNPKVVTVAEREGNHNHPIFLQRFIEALDYYTAVFESLDATLPPASKERHDVEQ 308
                 789999********************66655555...9************************************************************* PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +lg+ei n+va+eg+er erhe++e+W e ++++GF+++pls +a +qaklllr ++ s gy++   ++s++lgW+++pL+svS+W
  RWR95739.1 309 IWLGKEIANIVAAEGEERMERHERFESWMEIMRSSGFSNLPLSPFALSQAKLLLRLHYpSVGYQLRLLHDSFFLGWMNKPLFSVSSW 395
                 *************************************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MLRSLNSHEE QDTDHQHNPS HGLSSPAHHM RQLLISCAEL ISQSDLASAR RMVSLLFTRS  60
SPDGDSTERL VQQFTIALSM RLNAHNFIPT DSGAVQSSYL SLNQITPFIR FSHLTANQAI  120
LEAVEGHSSI HIIDFDTMQG VQWPPLMQAI AERSDPSNPP SIRITGTGHD METLRRTGDR  180
LQKFACSLGI NFHFHPLQIP HDTSPSAAAV LRLLPSSIAI LPDEVLAVNC VLYLHKLLSD  240
DSRNVRLFLR TIKAMNPKVV TVAEREGNHN HPIFLQRFIE ALDYYTAVFE SLDATLPPAS  300
KERHDVEQIW LGKEIANIVA AEGEERMERH ERFESWMEIM RSSGFSNLPL SPFALSQAKL  360
LLRLHYPSVG YQLRLLHDSF FLGWMNKPLF SVSSWY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-125GRAS family protein