PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95754.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 343aa MW: 38138.9 Da PI: 9.4469

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.1	1.3e-14	53	136	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L++a++ ++ +r+klk+++We+v+ ++ r +rspk qCk+k+e+++kry+ + +++ s++p+f++l+ RWR95754.1 53 EWSEGAVSSLLDAYEAKWVLRNRTKLKGQDWEDVACQVssR-SNGTRSPKtmtQCKNKIESMKKRYRSESASSDP------SSWPLFNRLH 136 5***********************************642.333565543339**********9999886......47***996 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MENQQNDDNN KNNNNIINNT RSKEEELLRR PLGIGGLGGG GGSSSSDRLR RDEWSEGAVS 60 SLLDAYEAKW VLRNRTKLKG QDWEDVACQV SSRSNGTRSP KTMTQCKNKI ESMKKRYRSE 120 SASSDPSSWP LFNRLHLLLR CRAPPAAPPL PPPSPPPPPQ PQPQPQPLML LDHHPPPPSA 180 LAPPPPPPPP HPQPVDDGNR KESPGINGVL AVAEENGVEA QLFNDRPNNI ALETDSSTPT 240 CSGDKETPKK KKKKKKKRKM DGERDDWDLA DSVRWLAEVV VRSEQARIDT MRELERIRAE 300 AEAKKGEMDL KRTQIIANTQ LEIARLLVGK SEDVDSSLKI GRN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MENQQNDDNN KNNNNIINNT RSKEEELLRR PLGIGGLGGG GGSSSSDRLR RDEWSEGAVS  60
SLLDAYEAKW VLRNRTKLKG QDWEDVACQV SSRSNGTRSP KTMTQCKNKI ESMKKRYRSE  120
SASSDPSSWP LFNRLHLLLR CRAPPAAPPL PPPSPPPPPQ PQPQPQPLML LDHHPPPPSA  180
LAPPPPPPPP HPQPVDDGNR KESPGINGVL AVAEENGVEA QLFNDRPNNI ALETDSSTPT  240
CSGDKETPKK KKKKKKKRKM DGERDDWDLA DSVRWLAEVV VRSEQARIDT MRELERIRAE  300
AEAKKGEMDL KRTQIIANTQ LEIARLLVGK SEDVDSSLKI GRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	255	KKKKKKK
2	249	257	KKKKKKKKK
3	250	256	KKKKKKK
4	250	258	KKKKKKKKK
5	251	257	KKKKKKK
6	251	259	KKKKKKKKK
7	252	258	KKKKKKK
8	252	260	KKKKKKRKM
9	253	259	KKKKKKK
10	253	261	KKKKKKRKM
11	254	259	KKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-32	Trihelix family protein