PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95849.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 518aa MW: 54810.9 Da PI: 5.7063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	299	344	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + +eY+k Lq RWR95849.1 299 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 344 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MDDFLNQILS SSPWPDVNAS SRSSWVGGAT TAQTNGLLSD PTGVYEEDEK NSSSPITASG 60 PIIGNSSFSL NKGLFHGEIQ QQEETTDHLS VPSRHDNGSH EGELSLHGVI GSNPTSGPLG 120 LQLNASPQIT LSHSSTQLPD SGSGYQVSLV DSHSIPPLWP TSYAGVSTLP SVIGQGKLHG 180 FGLQGDFMES NTNMLEGRYL GDEKLPQLDN FTTAAEHDEL RNPRFPSLAA GPPIALTRTA 240 TGLQPHQQSS PSMDTSSIKQ YTTQSCASQL QSPPTTAGGC NGAVKPRVRA RRGQATDPHS 300 IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIEYV KFLQLQVKVL SMSRLGAAGA 360 VVPLITDVQS EGSSSLLLSP SVGQGADLSE SPDNIAFEQE IVKLMESNVT TAMQYLQTKG 420 LCLMPIALAA ALSGGKASSN ALSTETKSAT HGLVSPNSGP PSSGTHLPSS SNESVTKESV 480 TRNGNIEGIA ANDCNGAVIK KEDAHKHAYD MRELKPKA

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MDDFLNQILS SSPWPDVNAS SRSSWVGGAT TAQTNGLLSD PTGVYEEDEK NSSSPITASG  60
PIIGNSSFSL NKGLFHGEIQ QQEETTDHLS VPSRHDNGSH EGELSLHGVI GSNPTSGPLG  120
LQLNASPQIT LSHSSTQLPD SGSGYQVSLV DSHSIPPLWP TSYAGVSTLP SVIGQGKLHG  180
FGLQGDFMES NTNMLEGRYL GDEKLPQLDN FTTAAEHDEL RNPRFPSLAA GPPIALTRTA  240
TGLQPHQQSS PSMDTSSIKQ YTTQSCASQL QSPPTTAGGC NGAVKPRVRA RRGQATDPHS  300
IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIEYV KFLQLQVKVL SMSRLGAAGA  360
VVPLITDVQS EGSSSLLLSP SVGQGADLSE SPDNIAFEQE IVKLMESNVT TAMQYLQTKG  420
LCLMPIALAA ALSGGKASSN ALSTETKSAT HGLVSPNSGP PSSGTHLPSS SNESVTKESV  480
TRNGNIEGIA ANDCNGAVIK KEDAHKHAYD MRELKPKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-56	bHLH family protein