PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR95896.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18508.2 Da    PI: 9.7213
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR95896.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-221057249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                r en+s rq+t+skR++g+ KKA ELSvLCd++va+++fs+ gk   y
  RWR95896.1 10 RLENTSARQITYSKRKAGLAKKAMELSVLCDINVALVMFSPAGKPTSY 57
                679****************************************96555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MGRRKIKIMR LENTSARQIT YSKRKAGLAK KAMELSVLCD INVALVMFSP AGKPTSYIGG  60
NNYWTNPEEV ETFPEIVAME ECLVESLNRL HKRKTQNSPW PPAQYFPRLN GRTQAEQNLA  120
LTMRDFGGHG NARGAAENVN MPFFNHAQLL SSVGPSYEVP PENLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.14e-21M-type_MADS family protein