PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95923.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 433aa MW: 48146.1 Da PI: 8.9377

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RWR95923.1 62 YVCEICNQGFQRDQNLQMHRRRH 84 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ RWR95923.1 139 WVCEKCSKGYAVQSDYKAHLKTC 161 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MFGSPSPPQG NNASSTVPPQ AFSCLENGSS NSKRKRRPAG TPDPDAEVVS LSPKTLLESD 60 RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRETPEVRK RVFVCPEPSC LHHDPCHALG 120 DLVGIKKHFR RKHSNHKQWV CEKCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF 180 IEHQDACNAG RLRSDLQTPQ PACLSRTASS PSPSSETNFS APTWPSLRMP TACSSKIPTA 240 ADIRHNLELQ LLPTSNPFSN TLDPSVPPNS DENHATQLQL SIGSQSSSGQ DRNSPKEKKA 300 IGEEPSSSSV TGLKEEAREQ LRLALAEKAF ADEARQQAKR QIELAEQEFT NAKKIRQHAQ 360 AELNKAQILK EHAKKQINAT LLQITCHACK QHFRAVAPLP LHDNSLAMSY MSSAITEGED 420 NDNSNRRQLI TNT

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MFGSPSPPQG NNASSTVPPQ AFSCLENGSS NSKRKRRPAG TPDPDAEVVS LSPKTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRETPEVRK RVFVCPEPSC LHHDPCHALG  120
DLVGIKKHFR RKHSNHKQWV CEKCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF  180
IEHQDACNAG RLRSDLQTPQ PACLSRTASS PSPSSETNFS APTWPSLRMP TACSSKIPTA  240
ADIRHNLELQ LLPTSNPFSN TLDPSVPPNS DENHATQLQL SIGSQSSSGQ DRNSPKEKKA  300
IGEEPSSSSV TGLKEEAREQ LRLALAEKAF ADEARQQAKR QIELAEQEFT NAKKIRQHAQ  360
AELNKAQILK EHAKKQINAT LLQITCHACK QHFRAVAPLP LHDNSLAMSY MSSAITEGED  420
NDNSNRRQLI TNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-148	C2H2 family protein