PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96069.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 512aa MW: 55559.1 Da PI: 6.7029

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.4	4e-16	309	355	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq RWR96069.1 309 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 355 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MSHRVPDFEE EYSMPMSSRF LPQRKSIMAE EDELLELLWQ NGQVVTQSQN QRCTKRSPPL 60 RFGGDDAVPH GRPGSGGRDE IGSPATAAAA AASQLFMQED EMASWLHYPI EETFDRDFCS 120 DLVFSGSAGN SGVAGRNGQV QVDRKSEEKP PESAPAAAPS RPPVYPARRR EAAEGVVNFA 180 HLSRGKGKGD SRPSDAREST VVDSSETPAA GEARVRVFQG EKTVAGSGGG NAGCGSTCGG 240 SREREPGTCE GALTSSSGVS SASAEDRKRK ARQGEESEWQ SEDAEYESLA EKKVTRRSTS 300 ARRARAAEVH NLSERRRRDR INEKMKALQE LIPRCNKSDK ASMLDEAIEY LKSLQLQVQM 360 MSMGCSMAPM MFPGVQQYMP AMGMGIGMGM EMAAASGFVR PMLPFPQVMS GPAMPGPSAS 420 HLSPRFPMPP FNLPHIPPSD QTRVQATNML DPASTSVNLH CTNMLQQSPN LTNPYHHYLG 480 LHHMQGPPQN QATAQQPSTN KGVETPENHQ SG

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MSHRVPDFEE EYSMPMSSRF LPQRKSIMAE EDELLELLWQ NGQVVTQSQN QRCTKRSPPL  60
RFGGDDAVPH GRPGSGGRDE IGSPATAAAA AASQLFMQED EMASWLHYPI EETFDRDFCS  120
DLVFSGSAGN SGVAGRNGQV QVDRKSEEKP PESAPAAAPS RPPVYPARRR EAAEGVVNFA  180
HLSRGKGKGD SRPSDAREST VVDSSETPAA GEARVRVFQG EKTVAGSGGG NAGCGSTCGG  240
SREREPGTCE GALTSSSGVS SASAEDRKRK ARQGEESEWQ SEDAEYESLA EKKVTRRSTS  300
ARRARAAEVH NLSERRRRDR INEKMKALQE LIPRCNKSDK ASMLDEAIEY LKSLQLQVQM  360
MSMGCSMAPM MFPGVQQYMP AMGMGIGMGM EMAAASGFVR PMLPFPQVMS GPAMPGPSAS  420
HLSPRFPMPP FNLPHIPPSD QTRVQATNML DPASTSVNLH CTNMLQQSPN LTNPYHHYLG  480
LHHMQGPPQN QATAQQPSTN KGVETPENHQ SG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	319	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-53	bHLH family protein