PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96169.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family bHLH
Protein Properties Length: 235aa    MW: 25892.2 Da    PI: 8.1075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.8e-051852201454
                 HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +r+++ +  Lr ++P        +++ +++L +Av+Y+ksL
  RWR96169.1 185 RRMKKMLTALRGIVPGG-----DRMDTVTVLDEAVRYLKSL 220
                 6899999********94.....5****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MQSDKKFYSR KVTPPLAYEV GGYTYDISGT SALNATLAGP KHTGPFHGVE LQAYEMCPKN  60
FIIFDQTDNK SRIMFHPALA NKFNCPSFDI HATCAEENGA INCNSKESSS LKEDTKDIDA  120
LLSLEEEDDD DEEVSTGRTM GNYGNSSPDS YSTSSSRPRK MRSSIQKSFP CGCSSSSGNS  180
EKKLRRMKKM LTALRGIVPG GDRMDTVTVL DEAVRYLKSL KVEVKKLGIG NLKKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.11e-33bHLH family protein