PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96248.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 223aa MW: 25754.2 Da PI: 9.7186

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	8.9e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeyss RWR96248.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYSS 59 79***********************************************96 PP
2	K-box	114.3	1.2e-37	78	173	5	100
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ s +e ++++qqe++kL+++i Lq+ +Rhl+Ge L+ +++keL+qLe++Lek++++iRskKnell+++ie++qk+e +lq+ n++Lr+k+ e RWR96248.1 78 NSGSISEVSTQYYQQEASKLRQQIGILQNANRHLMGETLSAMNVKELKQLETRLEKGISRIRSKKNELLFAEIEYMQKREIDLQNSNMYLRAKISE 173 334489999************************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSN RGRLYEYSSN 60 SVKATIERYK KASADTSNSG SISEVSTQYY QQEASKLRQQ IGILQNANRH LMGETLSAMN 120 VKELKQLETR LEKGISRIRS KKNELLFAEI EYMQKREIDL QNSNMYLRAK ISENERAQQN 180 MNVLPAHEYE VMPAFDSRNF LHVNLLEPHH GYSNHEQTAL HLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-109	MIKC_MADS family protein