PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96375.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 412aa MW: 44955.4 Da PI: 7.1374

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.4	3.6e-36	52	149	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec.....eaesssssasnsss 87 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL++++ pai+el ++ s+++++++ e+es+ RWR96375.1 52 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIKFYDVQDRLGYDRPSKAVDWLIKNSRPAIDELEELppwqptatSNPPHHHVfdqspEPESN--------- 141 79**************************************************************88776665333333333221111111......... PP TCP 88 gkaaksaakskksqks 103 +++++ ++ RWR96375.1 142 --------PNQQQMNR 149 ........11111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGESHHQHHY RHQQQHQLYH QQQSSSSSRM AVRGGGGGEI VEVQGGHIVR STGRKDRHSK 60 VCTAKGPRDR RVRLSAHTAI KFYDVQDRLG YDRPSKAVDW LIKNSRPAID ELEELPPWQP 120 TATSNPPHHH VFDQSPEPES NPNQQQMNRG DAGKNPVEAS EQAVSISVAP FGFQHLSNPS 180 FLPPSLDSDV IADTIKSFFP MAAASSAGAS ASTSIHFQNY PPDLLSRTSS QSQDLRLSLQ 240 SFQDPMLLHH QHQHHPMHSG EQALFSGAAP MAFDAGSNSW PEQQQQQRMI VWNAAESGGE 300 GAGGGGYVFA APSPMPLLGQ NPFFSQRGPL QSSNSPSVRA WVEQQPLLPP QISAEHQSAP 360 THHHYPSASS ISAIGFASGG FSGFRIPARI QGEEEHDADA NKPSSASSAR RH

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGESHHQHHY RHQQQHQLYH QQQSSSSSRM AVRGGGGGEI VEVQGGHIVR STGRKDRHSK  60
VCTAKGPRDR RVRLSAHTAI KFYDVQDRLG YDRPSKAVDW LIKNSRPAID ELEELPPWQP  120
TATSNPPHHH VFDQSPEPES NPNQQQMNRG DAGKNPVEAS EQAVSISVAP FGFQHLSNPS  180
FLPPSLDSDV IADTIKSFFP MAAASSAGAS ASTSIHFQNY PPDLLSRTSS QSQDLRLSLQ  240
SFQDPMLLHH QHQHHPMHSG EQALFSGAAP MAFDAGSNSW PEQQQQQRMI VWNAAESGGE  300
GAGGGGYVFA APSPMPLLGQ NPFFSQRGPL QSSNSPSVRA WVEQQPLLPP QISAEHQSAP  360
THHHYPSASS ISAIGFASGG FSGFRIPARI QGEEEHDADA NKPSSASSAR RH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-63	TCP family protein