PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96388.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 242aa    MW: 27837.5 Da    PI: 6.8531
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.71.7e-2817115197
      DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                 aCa+Ck++r+kC+++ C+lap fpae++++f++v+k+FG+sn +k+++a+++ e + ++++sl++eA +r+rdP +G+ + +++lq + ++l+  +++l
  RWR96388.1  17 ACASCKHQRKKCKREiCPLAPFFPAERTREFEAVQKVFGVSNAQKMIQAVDTREeQFIVAESLIWEAICRLRDPKHGCSADYKRLQAEKNKLQLLVHSL 115
                 7************999**********************************7666488999******************999999999888877655554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MEKERSMAAK KEETQQACAS CKHQRKKCKR EICPLAPFFP AERTREFEAV QKVFGVSNAQ  60
KMIQAVDTRE EQFIVAESLI WEAICRLRDP KHGCSADYKR LQAEKNKLQL LVHSLEKQNQ  120
ELLRLQISKN MQCFHNNVPQ QNQSLMKITY DNFNYIESGL IGTSNNDLIN RIDFGSLAHS  180
SIQHNEDYSF TDQLYTPMKT NVELMNQFNE AKIDSSGHVE PNAINMDNIM SSLCGTSWQE  240
AP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.18e-30LBD family protein