PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96420.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 188aa    MW: 21295.9 Da    PI: 6.1023
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.62.9e-40141131100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaC++lrr+C+++C lapyfp +++ +fa vhk+FGasnv+k+l+a++e++reda++s+vyeA+ar+rdP+yG++gvi+ lq++l+ l+ +l+++k+
  RWR96420.1  14 PCAACRLLRRRCSSSCLLAPYFPIDDTDSFAQVHKVFGASNVIKMLQAVDESRREDAVKSMVYEAKARLRDPIYGCAGVIFCLQKHLKDLEIQLQSTKA 112
                 7*********************************************************************************************99987 PP

      DUF260 100 e 100
                 +
  RWR96420.1 113 Q 113
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MDLSMQARTR SNQPCAACRL LRRRCSSSCL LAPYFPIDDT DSFAQVHKVF GASNVIKMLQ  60
AVDESRREDA VKSMVYEAKA RLRDPIYGCA GVIFCLQKHL KDLEIQLQST KAQFLESQAQ  120
RDQLLKVLAE SNHFDPFAQF NNLISDRYNL VSDDNTLGCN PYEYSSDFSG SQEIQGLYDQ  180
HGQTSYST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.17e-33LBD family protein