PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96625.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 511aa    MW: 56953.4 Da    PI: 6.1991
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.73.8e-1061515062374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +lL+e A a+s ++l++a+++L +l +lasp+g +  +R++ayf++A+a+r+++s+ +++  l +++       + + a+++f+++sP++kf+h+t N
  RWR96625.1 151 LTLLFESAVAISVDNLAEANRMLLELTQLASPYGpSCAERVVAYFAKAMASRVMNSWLGICFPLVTQK-------SIFGAFQVFNNISPFIKFAHFTSN 242
                 579*******************************9999**********************95444443.......46889******************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g     s + leetg+ L++fA +lg++fef++++ k+ + +++++++ ++
  RWR96625.1 243 QAILEAFHQRDRVHIVDLDIMQGLQWPALFHILATRIEGPPHIRMTGMGT----SIDLLEETGRHLSSFAGRLGISFEFHPIAKKSGDIIDPSTIQGRR 337
                 **************************************************....9**************************9999************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gEa+aVn+    h+l+d +++       +++l+ +l P+v+++veq++ +  +sFl+rf+ +l+yys++fdsl a+l +++  r+ +E+ ll+rei n+
  RWR96625.1 338 GEAVAVNWLQ--HSLYDATGPDWR----TMRLLEQLAPRVITLVEQDVTR-MGSFLDRFVGSLHYYSTIFDSLGASLTHDDPSRHRIEHCLLSREINNI 429
                 *********9..999988888877....********************99.889********************************************* PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +a  g +r  +  +++ Wr+ l +  F++vp+s++  +qa+l+l++++ s+gy++++ +g+l lgWk+ +L+++SaW+
  RWR96625.1 430 LAVGGPARSGED-KFNCWRAELVRHCFTQVPMSSNSLAQAQLILNMFPpSHGYTIHQGDGTLRLGWKGTSLYTASAWT 506
                 *******77665.5***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    
MMKGEFEVHG ALDLINTHEQ WDPNPIGLSV AHQVAENPYT MERPSTDTRY ANMERYELSE  60
WMEQVVKHLS EASPETPSEG LPIDTFPEDN FACANGDCRP RKCVRRENGG GIHCDGNGEE  120
PHWGGPSPGN QSSSSESKGL SRMDEHCLGL LTLLFESAVA ISVDNLAEAN RMLLELTQLA  180
SPYGPSCAER VVAYFAKAMA SRVMNSWLGI CFPLVTQKSI FGAFQVFNNI SPFIKFAHFT  240
SNQAILEAFH QRDRVHIVDL DIMQGLQWPA LFHILATRIE GPPHIRMTGM GTSIDLLEET  300
GRHLSSFAGR LGISFEFHPI AKKSGDIIDP STIQGRRGEA VAVNWLQHSL YDATGPDWRT  360
MRLLEQLAPR VITLVEQDVT RMGSFLDRFV GSLHYYSTIF DSLGASLTHD DPSRHRIEHC  420
LLSREINNIL AVGGPARSGE DKFNCWRAEL VRHCFTQVPM SSNSLAQAQL ILNMFPPSHG  480
YTIHQGDGTL RLGWKGTSLY TASAWTSNTM R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-138GRAS family protein