PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96656.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GATA
Protein Properties Length: 341aa    MW: 36274.4 Da    PI: 5.1015
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.2e-16253286134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C   kTp+WR gp g+ktLCnaCG++y++ +
  RWR96656.1 253 CLHCEIQKTPQWRMGPLGPKTLCNACGVRYKSGR 286
                 99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MIGQGFMDDL DTDVCGDLFD HIDDLLDFPN EEIGGGGGDV GGFEGCWPTG SGALTASDSS  60
FSAQADGGST SSRSHSVEDD LAPLPVPCED IAELEWLSAF MDDSFSTGSI DLDNDSLNNK  120
DPNTHNNESS FKTSSPVSVL ESSSSCSGKP MLLSPDTVVP GRARSKRPRP PSFSPRTAVT  180
LVSPTSSDTS SDVFPATHFL PELKNFAESL PAPKKSPKKK KKFPAPAPAT ATEDGAEVEA  240
APPLHQAGAV RKCLHCEIQK TPQWRMGPLG PKTLCNACGV RYKSGRLYPE YRPAASPTFV  300
ASLHSNSHKK VLEMRVKSGD KEPAPTPEFV RKNAGHLLDC A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-37GATA family protein