PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR96742.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 217aa    MW: 24413.4 Da    PI: 5.493
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR96742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-19102154254
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+
  RWR96742.1 102 RKKLRLSKEQSAILEESFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRAR 154
                 778899**********************************************9 PP
2HD-ZIP_I/II83.43.4e-27102169169
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR     +E++ + L+r+
   RWR96742.1 102 RKKLRLSKEQSAILEESFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARCCENLTEENRR-LQRE 169
                  69***************************************************99888887644.4444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MDGEDLQLSL SLQTIETDLQ ISTQPSTSDV EMRMNPRAID MNRIPTPTPS GFDVEDVVSS  60
PNSSGGAFVA GKRTSAEREE NEGGGGGGGG RMSDEEEGET TRKKLRLSKE QSAILEESFK  120
EHNTLNPKQK IALAKQLNLR PRQVEVWFQN RRARCCENLT EENRRLQREL LELRALKRSP  180
HFYMPVPATT LTMCPSCERV ETSENQTPIP SRQQIRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101107TRKKLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-40HD-ZIP family protein