PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96918.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 394aa MW: 44732.2 Da PI: 5.81

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.6	6.2e-27	61	142	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k+ykk ++++++ s + +y+++le RWR96918.1 61 WVLEETRSLIGFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEYKKARQQDRGS---GSAKTSYYKDLE 142 *******************************************************************985...344678999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MYLSEKPRPI DFYKAEGREM MMEVVSNGEL QTQQQQQQMI LAESSGEDHE VKAPKKRAET 60 WVLEETRSLI GFRREMDGLF NTSKSNKHLW EQISAKMREK GFDRSPTMCT DKWRNLLKEY 120 KKARQQDRGS GSAKTSYYKD LEDLMRERNK NAAYKSPTPS KVDSYMPFSD KGLEDAGISF 180 GSVEAGGRST LNLERRLDHD GHPLAITAAD AVTANGVPPW NWRDAPANGG DNHSSLGGRV 240 ILVKWGEYTR RIGIDGTADA IKEAIKSAFG LRTKRAFWLE DEDEVVRSLD RDMPLGTYNL 300 HLDEGLTIKV CLYDESDRIP VRTEEKTLYT EDDFRDFLSR RGWAGLRELS GFRGVDALDD 360 LRPGAMYQGG FRSVDTLDDL RPGAMYQGVR MLGD

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MYLSEKPRPI DFYKAEGREM MMEVVSNGEL QTQQQQQQMI LAESSGEDHE VKAPKKRAET  60
WVLEETRSLI GFRREMDGLF NTSKSNKHLW EQISAKMREK GFDRSPTMCT DKWRNLLKEY  120
KKARQQDRGS GSAKTSYYKD LEDLMRERNK NAAYKSPTPS KVDSYMPFSD KGLEDAGISF  180
GSVEAGGRST LNLERRLDHD GHPLAITAAD AVTANGVPPW NWRDAPANGG DNHSSLGGRV  240
ILVKWGEYTR RIGIDGTADA IKEAIKSAFG LRTKRAFWLE DEDEVVRSLD RDMPLGTYNL  300
HLDEGLTIKV CLYDESDRIP VRTEEKTLYT EDDFRDFLSR RGWAGLRELS GFRGVDALDD  360
LRPGAMYQGG FRSVDTLDDL RPGAMYQGVR MLGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein