PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR97065.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 363aa MW: 41825.5 Da PI: 6.7907

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR97065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	72	94	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H RWR97065.1 72 CSyeGCGKTFFDAGALRKHFHIH 94 77779**************8776 PP
2	zf-C2H2	13.1	0.00028	99	123	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cg+ F ++s L+rH H RWR97065.1 99 HTCHweGCGRKFLDSSKLRRHFLIH 123 79*******************8877 PP
3	zf-C2H2	22.2	3.5e-07	129	153	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL+ H+rtH RWR97065.1 129 FVCPheGCGKAFSLDFNLRAHMRTH 153 89**********************9 PP
4	zf-C2H2	16.5	2.4e-05	159	183	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi+ H RWR97065.1 159 HICPfkDCGKRYAHEYKLKTHIKAH 183 68*********************96 PP
5	zf-C2H2	17.6	1.1e-05	222	247	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp Cgks+ + + L+ H+r+ H RWR97065.1 222 YACPyeGCGKSYIHEYKLNLHLRReH 247 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MEQHPNPIVK NKTPAVKWFK EWVPQEVVAT GGKCLVLKWV TEDMLKALKE KHKEPEQKEP 60 EPEPTTEVLF LCSYEGCGKT FFDAGALRKH FHIHGEKQHT CHWEGCGRKF LDSSKLRRHF 120 LIHTGERDFV CPHEGCGKAF SLDFNLRAHM RTHSQENYHI CPFKDCGKRY AHEYKLKTHI 180 KAHHEKNTTM DVIKHTAQAE KTHSTPKTPA VAYGSASSDR PYACPYEGCG KSYIHEYKLN 240 LHLRREHPGH NSEENGKQTP DMDNDMDEAS DHDAYPGKGG NSKSVKRNKP VPSSKIQPSK 300 VAQRKGSNLA PVNLNVTRKQ QWPSKEMYEE DSEETEEDRE NVDEDGWRYG DNNEDDEETE 360 YED

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MEQHPNPIVK NKTPAVKWFK EWVPQEVVAT GGKCLVLKWV TEDMLKALKE KHKEPEQKEP  60
EPEPTTEVLF LCSYEGCGKT FFDAGALRKH FHIHGEKQHT CHWEGCGRKF LDSSKLRRHF  120
LIHTGERDFV CPHEGCGKAF SLDFNLRAHM RTHSQENYHI CPFKDCGKRY AHEYKLKTHI  180
KAHHEKNTTM DVIKHTAQAE KTHSTPKTPA VAYGSASSDR PYACPYEGCG KSYIHEYKLN  240
LHLRREHPGH NSEENGKQTP DMDNDMDEAS DHDAYPGKGG NSKSVKRNKP VPSSKIQPSK  300
VAQRKGSNLA PVNLNVTRKQ QWPSKEMYEE DSEETEEDRE NVDEDGWRYG DNNEDDEETE  360
YED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-128	C2H2 family protein