PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR97762.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 339aa    MW: 39518.8 Da    PI: 8.7132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR97762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-164491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++lv ++ ++G ++W+t +++ g+ R++k+c+ rw++yl
       RWR97762.1 44 KGTWSAEEDQILVSYISRFGHDNWRTLPKKAGLLRCGKSCRFRWLNYL 91
                     799*****************************99************97 PP
2Myb_DNA-binding491.4e-15138183148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  ++eE e++  ++kqlG++ W++Iar+++ gRt++++k++w+++l
       RWR97762.1 138 RGDYSKEEAEIIDSLHKQLGNR-WTAIARRLP-GRTDNEIKNYWHTHL 183
                      7889******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MFYIKRGGWF LSAVHQLRNL NRNLFHQNKK DMVKACCVKV GLKKGTWSAE EDQILVSYIS  60
RFGHDNWRTL PKKAGLLRCG KSCRFRWLNY LRPDIKRGDY SKEEAEIIDS LHKQLGLLRC  120
GKSCRFRWLN YLRPDIKRGD YSKEEAEIID SLHKQLGNRW TAIARRLPGR TDNEIKNYWH  180
THLKKRNKEI QAMTESKQTS AENSASNSNK EEKFQPIKVQ MTSEHPEHGL IFPLSSSSNF  240
ASDDGYLDKS IKESNEVVVE PFMQLETARE LSASNNFQSF PAELYTPEEY SLSNFEDSVI  300
QFPLSSHWLG GYDYLPLQYN TEMSVLFNNY EAGEMPFMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-50MYB family protein