PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR98035.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 259aa MW: 30012.8 Da PI: 4.9543

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR98035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ ++++G ++W+t +++ g+ R++k+c+ rw++yl RWR98035.1 13 KGTWSAEEDQILISFIRRFGYDNWRTLPKRAGLLRCGKSCRFRWLNYL 60 799***************************99**********97 PP
2	Myb_DNA-binding	27.7	6.2e-09	66	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e++ ++kqlG++ ++ gRt++++k++w+++l RWR98035.1 66 RGNYSKEEEEIIDSLHKQLGNR--------LP-GRTDNEIKNYWNTHL 104 899***************99.........************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MEKACCVKVG LKKGTWSAEE DQILISFIRR FGYDNWRTLP KRAGLLRCGK SCRFRWLNYL 60 SPDIKRGNYS KEEEEIIDSL HKQLGNRLPG RTDNEIKNYW NTHLKKRKKN QAMTETRQTS 120 IENSSSSTNK EEFFQPIPAQ MILEYLENDL IFSQSSSSNF ASDNGSMAKN IKQSNEVVVE 180 QFMQSETAHE LGTSINFQSL LAELYTPEEY SLSSFEDPVL QFPLSPLSMG EYDYLPLQYN 240 TEMNILFNNY EEGEMPLTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	109	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-53	MYB family protein