PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV81793.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

Trihelix

Protein Properties

Length: 486aa MW: 54390.6 Da PI: 5.3708

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV81793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	102.4	3.4e-32	261	345	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+ +e+r+++ lk+plWeevs+ ++ g++rs+k+Ckekwen+nk+++k+k++ kkr +++s+tc+yf+ql+ RWV81793.1 261 RWPKAEVQALIRVRSGLESRFQEPGLKGPLWEEVSATLATMGYHRSAKRCKEKWENINKYFRKTKDSGKKR-PQHSKTCSYFQQLD 345 8******************************************************************98.9*********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
RPLDIDYINR NNKRCKDTET DTSNAKYSRK SKQVADSDHV SAAGGSNYKI FSELEAIYKP 60 GGGPNQTGSG SALTGDETPL LHVTAAAPSG LPTADRVGGT SETSAGEEAQ AKKVPKGSGR 120 RKRKRRQRQL SSVVAFFENL VKQIMDHQEG LHMKFLEVME RREQERTSRE EAWRKQEAAK 180 SSHEAAARAQ ERSLASSREA AIISFLEKIT GESLNLPSKP QFPDVDDDKE ENVNNIGNLQ 240 IETFNNNMNP DSNKVMFNTS RWPKAEVQAL IRVRSGLESR FQEPGLKGPL WEEVSATLAT 300 MGYHRSAKRC KEKWENINKY FRKTKDSGKK RPQHSKTCSY FQQLDQLYAK SLTNKPHPSS 360 SSPTANVATA LASGASNDQR KDNSELLDVV VVPTDHQSFK VSDMGALRFD FNNSKGEDTN 420 QTAAREPMEN NDEADEEEEE EDDDEEEAEG EGESQGQENL SGRRYQLDQE EDDLRGSSLF 480 FQRLQS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

RPLDIDYINR NNKRCKDTET DTSNAKYSRK SKQVADSDHV SAAGGSNYKI FSELEAIYKP  60
GGGPNQTGSG SALTGDETPL LHVTAAAPSG LPTADRVGGT SETSAGEEAQ AKKVPKGSGR  120
RKRKRRQRQL SSVVAFFENL VKQIMDHQEG LHMKFLEVME RREQERTSRE EAWRKQEAAK  180
SSHEAAARAQ ERSLASSREA AIISFLEKIT GESLNLPSKP QFPDVDDDKE ENVNNIGNLQ  240
IETFNNNMNP DSNKVMFNTS RWPKAEVQAL IRVRSGLESR FQEPGLKGPL WEEVSATLAT  300
MGYHRSAKRC KEKWENINKY FRKTKDSGKK RPQHSKTCSY FQQLDQLYAK SLTNKPHPSS  360
SSPTANVATA LASGASNDQR KDNSELLDVV VVPTDHQSFK VSDMGALRFD FNNSKGEDTN  420
QTAAREPMEN NDEADEEEEE EDDDEEEAEG EGESQGQENL SGRRYQLDQE EDDLRGSSLF  480
FQRLQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	GRRKRKRRQ
2	120	125	RRKRKR
3	120	126	RRKRKRR
4	120	127	RRKRKRRQ
5	121	126	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-48	Trihelix family protein