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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWV82014.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 255aa MW: 28729.2 Da PI: 4.6197 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 58.7 | 9.9e-19 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL rq+ vWFqNrRa++k
RWV82014.1 71 KKRRLSVDQVKALEKDFEVMNKLDPERKVRLAHELGLRPRQIAVWFQNRRARWK 124
456899***********************************************9 PP
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| 2 | HD-ZIP_I/II | 121.5 | 4.3e-39 | 70 | 160 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kkrrls +qvk+LE+ Fe +kL+perKv+la+eLgl+prq+avWFqnrRAR+ktkqlE dy aLk ++dalk + ++L+ ++e+L +e
RWV82014.1 70 QKKRRLSVDQVKALEKDFEVMNKLDPERKVRLAHELGLRPRQIAVWFQNRRARWKTKQLECDYGALKVRHDALKLDVDALRGDKEALMAEA 160
69************************************************************************************98765 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 255 aa Download sequence |
MTILLPRLQD IMVGINLRPA HEQGEQASEA NEEDQQLGLQ RVRHSLLLEG TEEMEWDDEL 60 CSNGSSSLGQ KKRRLSVDQV KALEKDFEVM NKLDPERKVR LAHELGLRPR QIAVWFQNRR 120 ARWKTKQLEC DYGALKVRHD ALKLDVDALR GDKEALMAEA KLADPATPKV EEDGRALGFR 180 DGTSDTDSSA ALNEEASPYS GALLDQHHCV PETKSHCSSI FMEEDGFLRG EELCGALFSE 240 EQAPTLPWCC TEGWE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 119 | 127 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 2e-45 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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