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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWV82287.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 257aa MW: 28872.8 Da PI: 5.1294 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 58.1 | 1.5e-18 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq ++Le+ F+ +++++++++ +LA+ lgL+ rqV vWFqNrRa++k
RWV82287.1 68 KKRRLSMEQAKALEKNFKVENKLDRKRKLRLAQDLGLQPRQVAVWFQNRRARWK 121
45689************************************************9 PP
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| 2 | HD-ZIP_I/II | 123.3 | 1.2e-39 | 67 | 158 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrls eq+k+LE++F+ e+kL+ +rK +la++LglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk + ++L++++e+L +e+k
RWV82287.1 67 EKKRRLSMEQAKALEKNFKVENKLDRKRKLRLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYGTLKAQHDALKLDGDALRHDKEALIAEIK 158
69*************************************************************************************99987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 257 aa Download sequence |
SLPCPPLLIR SLSLSLSLSL SLSLERSPDL HFSLLSAEEK VKYDGFLLDG MEEMECEEEL 60 CSNGLGEKKR RLSMEQAKAL EKNFKVENKL DRKRKLRLAQ DLGLQPRQVA VWFQNRRARW 120 KTKQLERDYG TLKAQHDALK LDGDALRHDK EALIAEIKYL KAKLSASEMD AAAEEARPPL 180 ICKGGASDSD CSVVFTAEAN QAHGSSFSFD NKARDAQCSY LAEEVLGGEE LCSSLFSEQP 240 LLLLDAWDYD NFKLSLQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 68 | 95 | KKRRLSMEQAKALEKNFKVENKLDRKRK |
| 2 | 116 | 124 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G22430.1 | 7e-45 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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