PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV82323.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

NF-YC

Protein Properties

Length: 251aa MW: 27751.2 Da PI: 6.6692

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV82323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.1	4.1e-18	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P+l+ska elf+ +l r++ + + +tl+ ++++v +dfl+ +v + RWV82323.1 7 TRFPASRIKKIMQADEDVGKIALAVPILVSKALELFLQDLCDRTYEITLQRGAKTLNSLHLKQCVRTYSAYDFLTGVVNK 86 579***********************************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPILVSKALE LFLQDLCDRT YEITLQRGAK 60 TLNSLHLKQC VRTYSAYDFL TGVVNKVSNL GGMEPCEDEK GICRRRKTLP HGDEVESNEN 120 CQLRSSKMAM TNTSVSPRGR GRGRGRGRGR PPTRARDVGH VKFEDDSSMF GDHDEIPLGQ 180 PEGTKENSHQ SALPSSSPTM NGSATSTVEA KQEQCSAWPL PGGVDNVSIE PSRLVQLTMQ 240 IDEDEDYDNE D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	147	RGRGRGRGRG
2	138	148	RGRGRGRGRGR
3	140	149	RGRGRGRGRG
4	140	150	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-49	NF-YC family protein