PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV85732.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

SBP

Protein Properties

Length: 376aa MW: 42600.1 Da PI: 8.9489

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV85732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	75.5	8.5e-24	143	192	1	50
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 +Cq+egC++dls ak+yhrrhkvCe+hska+vv+++gl+qrfCqqCsr+ RWV85732.1 143 RCQAEGCKVDLSGAKHYHRRHKVCEFHSKATVVIAHGLQQRFCQQCSRYD 192 6***********************************************96 PP
2	SBP	52	1.9e-16	282	315	44	77
TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 44 qqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 q +rfh+l efDe+krsCr+rLa+hn+rrrk+q RWV85732.1 282 QMVARFHALAEFDEAKRSCRKRLADHNRRRRKPQ 315 7789****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MMNRSNSAEA FVPSVVSFAG LEGNNQKRHL WDWATASHNL NAAVPTTNHA TIDLQSHPIF 60 PPAPALDCPP LLFPMNHFPF CPPPSVPDFP VALIKTEDGI DSGGRIGLNL GQRTYFSSGD 120 GHEMDHLFAR SRGVYSLSHQ PPRCQAEGCK VDLSGAKHYH RRHKVCEFHS KATVVIAHGL 180 QQRFCQQCSR YDPFVSSITK TRRKKNPHPI PFFLQSMFPC LMLPIFLLVE RACNAADEVW 240 KRERERERER EREEIIVELD GLAIFPIKRE MGFSSLFLIL LQMVARFHAL AEFDEAKRSC 300 RKRLADHNRR RRKPQLATAI AESSASVIPT ANPNMEKTKQ AQHISNDLKS PSFIIFVLLC 360 TVLPIKSLFF SCIDLH

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MMNRSNSAEA FVPSVVSFAG LEGNNQKRHL WDWATASHNL NAAVPTTNHA TIDLQSHPIF  60
PPAPALDCPP LLFPMNHFPF CPPPSVPDFP VALIKTEDGI DSGGRIGLNL GQRTYFSSGD  120
GHEMDHLFAR SRGVYSLSHQ PPRCQAEGCK VDLSGAKHYH RRHKVCEFHS KATVVIAHGL  180
QQRFCQQCSR YDPFVSSITK TRRKKNPHPI PFFLQSMFPC LMLPIFLLVE RACNAADEVW  240
KRERERERER EREEIIVELD GLAIFPIKRE MGFSSLFLIL LQMVARFHAL AEFDEAKRSC  300
RKRLADHNRR RRKPQLATAI AESSASVIPT ANPNMEKTKQ AQHISNDLKS PSFIIFVLLC  360
TVLPIKSLFF SCIDLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	252	RERERERERER
2	297	314	KRSCRKRLADHNRRRRKP
3	309	339	RRRRKPQLATAIAESSASVIPTANPNMEKTK
4	310	340	RRRRKPQLATAIAESSASVIPTANPNMEKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	3e-34	SBP family protein