PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV86743.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 433aa MW: 47510.1 Da PI: 7.7986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV86743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.5	1.5e-10	47	72	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++Ck++H+ RWV86743.1 47 PGQPDCLYYLRTGVCGYGSKCKYNHP 72 5789*********************8 PP
2	zf-CCCH	35.1	2.2e-11	90	115	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tG CkyG +Ck++H++ RWV86743.1 90 GQPDCQFFLKTGMCKYGITCKYHHPR 115 6899********************96 PP
3	zf-CCCH	37.3	4.6e-12	137	160	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++++tG CkyG CkF+H++ RWV86743.1 137 KQCAHYMKTGSCKYGVACKFNHPQ 160 67********************97 PP
4	zf-CCCH	39.4	9.8e-13	277	302	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG +Ck++H++ RWV86743.1 277 DQPECQYYMKTGSCKYGTSCKYHHPK 302 689*********************96 PP
5	zf-CCCH	33.7	6.2e-11	321	346	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC f+ +G CkyG +CkF H+ RWV86743.1 321 PGQPLCTFYTTYGSCKYGTTCKFDHP 346 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MSDVRHNAVP NSSNASPDNI EGAMWQLHIE DGQEEADGQL NQYPDRPGQP DCLYYLRTGV 60 CGYGSKCKYN HPAHSEQITR FSGELPQRDG QPDCQFFLKT GMCKYGITCK YHHPRDKHDT 120 RLVQLNVFGL PIREDEKQCA HYMKTGSCKY GVACKFNHPQ PANPGSAFSV IGSSVYGYSG 180 SMAPTSGLTV IGGISSWPFS RIPYVSSPRM QGPPAYVPFV LAPSQGNMPL QQGWSTYMGS 240 VNDMSSTDML APSKIANSRH QEQPGSSMPL SLPERPDQPE CQYYMKTGSC KYGTSCKYHH 300 PKEKNQADMA TIGPLGLPLR PGQPLCTFYT TYGSCKYGTT CKFDHPLVGY YGYSLQPFAA 360 YPDPSALLPG QRSSKVTRTS AEDSSSKASK LPEQLAESET RGPRMKSGTH EHGNPSANAS 420 SSDTEPHPES PRN

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MSDVRHNAVP NSSNASPDNI EGAMWQLHIE DGQEEADGQL NQYPDRPGQP DCLYYLRTGV  60
CGYGSKCKYN HPAHSEQITR FSGELPQRDG QPDCQFFLKT GMCKYGITCK YHHPRDKHDT  120
RLVQLNVFGL PIREDEKQCA HYMKTGSCKY GVACKFNHPQ PANPGSAFSV IGSSVYGYSG  180
SMAPTSGLTV IGGISSWPFS RIPYVSSPRM QGPPAYVPFV LAPSQGNMPL QQGWSTYMGS  240
VNDMSSTDML APSKIANSRH QEQPGSSMPL SLPERPDQPE CQYYMKTGSC KYGTSCKYHH  300
PKEKNQADMA TIGPLGLPLR PGQPLCTFYT TYGSCKYGTT CKFDHPLVGY YGYSLQPFAA  360
YPDPSALLPG QRSSKVTRTS AEDSSSKASK LPEQLAESET RGPRMKSGTH EHGNPSANAS  420
SSDTEPHPES PRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	2e-93	C3H family protein