PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV87421.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 614aa MW: 67139.2 Da PI: 8.6569

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV87421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H RWV87421.1 154 FVCEVCNKGFQREQNLQLHRRGH 176 89*******************88 PP
2	zf-C2H2	12.4	0.00047	230	252	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RWV87421.1 230 WKCDKCSKRYAVQSDWKAHSKTC 252 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MSSICLPDSV EFKAHFDLWV LTPREEQAPN DGKCPVDLFP HSDTLVYVNS VDTRLSGSRR 60 RRRSTGSSSS EEKEEPPSKP KQVSQITNAC MQKTNPNSQI FNLFGFFPPK IAIPHVVKSN 120 DFIVRTPLTL IESADPEAEV IALSPKTLLA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW 180 KLKQKNHKDV RRRVYICPEP TCAHHDASRA LGDLTGIKKH YCRKHGEKKW KCDKCSKRYA 240 VQSDWKAHSK TCGTREYRCD CGTLFSRAFC DALAQESARV PGSMNTIGSH FYGNTAIDLG 300 LPHLNSQLST LQDQTHPSAD ILRLGGNGNA MQFNHLTVPS FRPPPPPQSA PFYLGGGSSQ 360 DINENTQLLR SKPFHGYMQL QHLLQTNTGS SSSSAAAAAT NLSNLGIFSD SSNRSTVANS 420 SNVAMNRNAH LLVSDPFNSA SESNEPNALF AGYIVGNNLI DANMSPMCNN SVSNESMAPH 480 MSATALLQKA TQMGATSSCS SGSSSLRGAG SLYSSGANNA GSRPVFDGVD NENHFRDLVN 540 SLTNKSSGIL NGGNQQETGF SGFGATDRLT RDFLGVGSMM RRMGGGLTQR EEQHLGIDMA 600 SLDPELKSFC NKRY

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MSSICLPDSV EFKAHFDLWV LTPREEQAPN DGKCPVDLFP HSDTLVYVNS VDTRLSGSRR  60
RRRSTGSSSS EEKEEPPSKP KQVSQITNAC MQKTNPNSQI FNLFGFFPPK IAIPHVVKSN  120
DFIVRTPLTL IESADPEAEV IALSPKTLLA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW  180
KLKQKNHKDV RRRVYICPEP TCAHHDASRA LGDLTGIKKH YCRKHGEKKW KCDKCSKRYA  240
VQSDWKAHSK TCGTREYRCD CGTLFSRAFC DALAQESARV PGSMNTIGSH FYGNTAIDLG  300
LPHLNSQLST LQDQTHPSAD ILRLGGNGNA MQFNHLTVPS FRPPPPPQSA PFYLGGGSSQ  360
DINENTQLLR SKPFHGYMQL QHLLQTNTGS SSSSAAAAAT NLSNLGIFSD SSNRSTVANS  420
SNVAMNRNAH LLVSDPFNSA SESNEPNALF AGYIVGNNLI DANMSPMCNN SVSNESMAPH  480
MSATALLQKA TQMGATSSCS SGSSSLRGAG SLYSSGANNA GSRPVFDGVD NENHFRDLVN  540
SLTNKSSGIL NGGNQQETGF SGFGATDRLT RDFLGVGSMM RRMGGGLTQR EEQHLGIDMA  600
SLDPELKSFC NKRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	2e-94	C2H2 family protein