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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWV88170.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 200aa MW: 23679.4 Da PI: 9.9444 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 53.4 | 4.3e-17 | 22 | 75 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq + Le F +++++ ++ +LA++lgL+ +q+ vWFqNrRa++k
RWV88170.1 22 KKRRLNDEQAKLLEMRFGEDKKLELGRKLRLATELGLDPKQIAVWFQNRRARDK 75
456899**********************************************99 PP
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| 2 | HD-ZIP_I/II | 102 | 5.2e-33 | 22 | 105 | 2 | 85 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
kkrrl++eq+klLE+ F e++kLe rK +la+eLgl+p+q+avWFqnrRAR k+kq+E+ y +Lk +d + e+++Le+ev+
RWV88170.1 22 KKRRLNDEQAKLLEMRFGEDKKLELGRKLRLATELGLDPKQIAVWFQNRRARDKSKQVEEAYLKLKPVHDVAVVEKCHLENEVS 105
9*******************************************************************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 200 aa Download sequence |
MMRGHCERRA RRRRKKAKGD AKKRRLNDEQ AKLLEMRFGE DKKLELGRKL RLATELGLDP 60 KQIAVWFQNR RARDKSKQVE EAYLKLKPVH DVAVVEKCHL ENEVSLHREW MLSRFSSMVD 120 WNCMELWQVM KLKERLLEAQ EKIRKLSLSM KEAVDGSRPG SSTFSHQPLV AGFGVAEEEA 180 ELMYIQESDF SNYMMEWAYF |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 8 | 16 | RRARRRRKK |
| 2 | 11 | 25 | RRRRKKAKGDAKKRR |
| 3 | 11 | 26 | RRRRKKAKGDAKKRRL |
| 4 | 12 | 26 | RRRRKKAKGDAKKRR |
| 5 | 12 | 27 | RRRRKKAKGDAKKRRL |
| 6 | 13 | 28 | RRRRKKAKGDAKKRRL |
| 7 | 70 | 78 | RRARDKSKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66700.1 | 2e-29 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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