PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV88426.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 588aa MW: 62499.8 Da PI: 9.3335

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV88426.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RWV88426.1 87 FICEVCNKGFQREQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	11.7	0.00081	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + RWV88426.1 163 WKCDKCSKRYAVQSDWKAHSKIC 185 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MKAASSSTHF FGIREDGQHS HQQPQLPPPP PPPPPPQELP ATASSANTPH SAAPPKKKRN 60 LPGNPSKYLN AEVIALSPKT LLATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP 120 NEVRRRVYLC PEPTCVHHDP SRALGDLTGI KKHYCRKHGE KKWKCDKCSK RYAVQSDWKA 180 HSKICGTREY RCDCGTLFSR YCCLHAPISL NAQNGCRRDS FITHRAFCDA LAQESGRLPG 240 GMNTIGSHLY GSRAINLGLP QLSSLQDQAQ PSADLLHLRG SSGTGQFEHL NAASFRQPHQ 300 LAHSSPFFLG GGGQNQGFGE DPQLLKPFHG MIQLADLQTN ANASSSSSAA AAANLFDLGF 360 FSNTGSSSTM NNGSEAGGQS GHLLGPNQFS NAGGGTEAMS LFTGDLMSNH TDTTMSSLYN 420 PSVHAESVVP QMSATALLQK AAQMGATSSG GSGSSMLRGL TASFSGGGGG GGGGGGESSR 480 IRVGNENHFQ DIMNSLANGN GGGVFGGFHQ GLDGMGENKL QRNLSMGGFG GSDRLTRDFL 540 GVGGMMRSMV GGIPQREQQL GLDTTSSMDH SEMKSGSSTR SFGGGRLQ

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MKAASSSTHF FGIREDGQHS HQQPQLPPPP PPPPPPQELP ATASSANTPH SAAPPKKKRN  60
LPGNPSKYLN AEVIALSPKT LLATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP  120
NEVRRRVYLC PEPTCVHHDP SRALGDLTGI KKHYCRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKICGTREY RCDCGTLFSR YCCLHAPISL NAQNGCRRDS FITHRAFCDA LAQESGRLPG  240
GMNTIGSHLY GSRAINLGLP QLSSLQDQAQ PSADLLHLRG SSGTGQFEHL NAASFRQPHQ  300
LAHSSPFFLG GGGQNQGFGE DPQLLKPFHG MIQLADLQTN ANASSSSSAA AAANLFDLGF  360
FSNTGSSSTM NNGSEAGGQS GHLLGPNQFS NAGGGTEAMS LFTGDLMSNH TDTTMSSLYN  420
PSVHAESVVP QMSATALLQK AAQMGATSSG GSGSSMLRGL TASFSGGGGG GGGGGGESSR  480
IRVGNENHFQ DIMNSLANGN GGGVFGGFHQ GLDGMGENKL QRNLSMGGFG GSDRLTRDFL  540
GVGGMMRSMV GGIPQREQQL GLDTTSSMDH SEMKSGSSTR SFGGGRLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-104	C2H2 family protein