PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV88935.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 272aa MW: 28885.6 Da PI: 7.1836

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV88935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	4.9e-18	88	139	3	54
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 k+ +++keq + Lee F+++++++ +++e LA+kl+L rqV vWFqNrRa RWV88935.1 88 KKLRLSKEQSRLLEESFRQHHTLNPKQKEALAMKLELRPRQVEVWFQNRRAS 139 67789*********************************************95 PP
2	HD-ZIP_I/II	80.1	3.5e-26	88	141	2	55
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRA t RWV88935.1 88 KKLRLSKEQSRLLEESFRQHHTLNPKQKEALAMKLELRPRQVEVWFQNRRASTT 141 9**************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MCSFSSFGRP MGSLGRSPSG LDLTIGVPGS TSSSSSSPVW SGRFSFLAGG GGSMRDLDIN 60 QPAYGGEEEF PMGSVEEEEE EGGTPRPKKL RLSKEQSRLL EESFRQHHTL NPKQKEALAM 120 KLELRPRQVE VWFQNRRAST TCVVVQDEAE ADGDGVRVPE AVLRVADGGE PPSAPGGGGA 180 AGASGGSAHR ALPPHPPAAA GLVLDHVPPV RAGDRGAVAG WAPPVPPPRP PAFRRTRGWL 240 TEIVPDRLCT SEKHRAGVFH LNISTLLCFV VF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-25	HD-ZIP family protein